Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc693g00004 ATGGCCACAAGAAGTAGCTTGAAGACACCATTACCAACTTCCTTCTTCGCCCTTCTTTTCTCTATCTTCATATTCCTTTCTCCTTCTCTTGCTGAAGATGATTTAACCTTCTCTCCGTGCAACCTCACACCCCACCCTACATTTTGCAATGCCACTCTACCCTCTCACAACATTTTATCCGTACACGACCAATGCCGGTTCTTCCTTAACCAATCCTTAGCAATAACAAAGACGGTTCTCGAATTGGTCTCTTCTTATCTAAGAGACCGGTGGATGACAATTCCGGTTTCAACTTTGCATGCCATCGAAGACTGCGTGAACTTTGCAGAACTCAACATTGATTTCTTGTCCATTGTCCTCGGAGCCGCCGAAAGAACCGCCGCTAATAGCTTTCAAAATCATTATGATACGCAAACATTGCTCAGCGCCGTCTTAACCAATCTTCAAACGTGTATAGACGGTTTTCACGAAGTAACTCCATATCCAAAAATCAATGGGGATTTATCGAGCGTACTAACAAATGCATACAAGCTTTATAGCGTTTCCTTGGCGCTTTTCACCCAAGGTTGGGTTAAAAACGCGGCTAGTACAAATGCAGAAGACAAAAAAACAACAACGGTAGACTTAGACGGCGATCAAGTGTTGGTAGTTCAAGAGAAAGTGGTGGTGAATCCGGACGAATCCGGGGATTTCACCACCATAAATGATGCTGTGGACGCTGCACCTAACAATACCGGCACCAACAATGGGTACCATGTTATTTATGTTGTTGCTGGGATTTACAACGAGTACGTGTCACTTTCGAAGTACAAGCAGAACGTGATGATCGTTGGTGAGGGAATCAATCGCACGGTGATCACTGGCAATCGAAGCGTGGTTGATGGATGGACCACTTTCCAGTCTGCTACTTTCGCTGTAGTTGGAAAAGGGTTTGTAGCAGTAAACATAACATTTCGCAACACCGCGGGCTCCACCAAGCACCAAGCAGTAGCTGTAAGAAACGGTGCAGACATGTCCACGTTCTACGCCTGCAGTTTCGAAGGCTATCAAGACACGCTTTACACGCATTCTCTTAGACAGTTCTACAAAAACTGTAATATTTACGGTACAGTTGACTTCATCTTCGGCAATGCCGCAACGCTGTTCCAAGACTGTAACATTTTTCCAAGACTACCAATGAAGAACCAATTCAACGCCATCACGGCTCAAGGCCGAACCGATCCGAACCAAAACACCGGAATTTCGATTCAGAACTCATGGATCGTTGGTGATGACAATGGGAACTATAGCAGCGTGGAGACGTATCTGGGAAGGCCTTGGAAGGAGTATTCAAGAACGGTATACGTGCAGTGTTTCATGGATGGGATAGTTGATGGAAAAGGTTGGGCTGAGTGGAATGGGGATTTTGCATTGAGGACCTTGTATTATGCGGAATTTGCTAACTGGGGACCAGGTTCAAATATTACTAATAGGGTCACGTGGGAAGGGTACCATCTGGTGGATGAAGATGATGCAGATGGTTTCACTGTGTACAATTTCATACAAGGTGATTCATGGCTGCCCAAGACTGGAGTACCTTTCAAAGCTGGGTTATTTTGA 1599 0.4509 MATRSSLKTPLPTSFFALLFSIFIFLSPSLAEDDLTFSPCNLTPHPTFCNATLPSHNILSVHDQCRFFLNQSLAITKTVLELVSSYLRDRWMTIPVSTLHAIEDCVNFAELNIDFLSIVLGAAERTAANSFQNHYDTQTLLSAVLTNLQTCIDGFHEVTPYPKINGDLSSVLTNAYKLYSVSLALFTQGWVKNAASTNAEDKKTTTVDLDGDQVLVVQEKVVVNPDESGDFTTINDAVDAAPNNTGTNNGYHVIYVVAGIYNEYVSLSKYKQNVMIVGEGINRTVITGNRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSTKHQAVAVRNGADMSTFYACSFEGYQDTLYTHSLRQFYKNCNIYGTVDFIFGNAATLFQDCNIFPRLPMKNQFNAITAQGRTDPNQNTGISIQNSWIVGDDNGNYSSVETYLGRPWKEYSRTVYVQCFMDGIVDGKGWAEWNGDFALRTLYYAEFANWGPGSNITNRVTWEGYHLVDEDDADGFTVYNFIQGDSWLPKTGVPFKAGLF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc693g00004 532 Pfam Pectinesterase 221 517 IPR000070 GO:0030599|GO:0042545
Stsc693g00004 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Stsc693g00004 532 SUPERFAMILY Pectin lyase-like 218 530 IPR011050 -
Stsc693g00004 532 FunFam Pectinesterase 214 531 - -
Stsc693g00004 532 Gene3D - 215 531 IPR012334 -
Stsc693g00004 532 PANTHER PECTINESTERASE 38 521 - -
Stsc693g00004 532 CDD PMEI-like_3 40 190 - -
Stsc693g00004 532 SMART PMEI_2 31 185 IPR006501 GO:0004857
Stsc693g00004 532 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Stsc693g00004 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 188 IPR035513 -
Stsc693g00004 532 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc693g00004 Stsc-Chr693 15369 17590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc693g00004 6 532 Carbohydrate Esterase AT4G02330 48.866 3.09e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc693g00004 K01051 - gmx:100810329 743.421