Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc693g00003 ATGGACGATTCAAGAAGGAATGAACTCCAAGAAAGTGCGAATTCGAAGCGGAGAATCGCCTTGATAGGCGTATCTACCGTGATACTGGTTGCTATGGTGGTGGCGGTTACGGTGGGCGTGACTCAAACCGATAACGGCGACGAAAAAAGCAACAAAGATAAGAATCATATGGCTTCGACGGTTAAAGCAGTTACAGCCCTTTGCCAGCCAACAGATTATAAGAAAGAATGCGAGGAAAGCCTAACGGCAGAAGCTGGTAACACGACGGAGCCAAGAGAACTGATCAAGATTGCGTTTAATGTGACGATTCAGAAGATTGGTGTTGGGCTCCAGAAATCACATCTCTTGCAAGAGGCTGAGAAGGAACCTAGGGCGAAGATGGCGCTTGACACGTGTAAGCAGCTCATGAATCTCTCCATTAGCGAGTTTACAAGGTCTCTCGAGGGGATATCACAATTTAATCTCAACAACCTCGATGAAATCCTCACCAGCCTAAAGGTATGGCTTAGCGGTGCAGTGACATATCAAGAGACATGCTTGGATGCATTTCAGAACACAACAAGCCACGCCGGTCAAAAGATGAAGGAAGCGTTGACCAATTCAACGAAGATGAGCAGCAATGCACTAAGCATAGTCACAGAACTCGCAAACACTTTCTCACAGTTAAACGAAAAGAACGAAAAAGATGAGTCTCGTCGTCACCTCACTGATGATCTTCCACCGTGGGTTGATTATGGTGCTGGTGTACGTAGACTCCTCAATTCGAGTCCACGGAAGATGCAGCCCAATTTGATTGTGGCCAAAGATGGGAGCGCAAAGTTCAGCAGCATCAATCAGGCTTTGAAGAAAGTTCCTATGAAGAACACGAAGCCATTTGTGATATTCATAAAGAAAGGGGTTTACAAAGAGTATGTTGAGGTTACTAGGGAGATGAGACATGTTGTGTTTATTGGTGAAGGTAGCGATAAGACAAGAATCACTGGCAGCAAAAACTTCATTGATGGGGTTAACACTTATAAAACTGCTTCCGTAGCAATTCTAGGAGATTATTTTACCGCCATACACATGGGGTTTGAGAACACCGCCGGTCCCCAAAAACACCAAGCAGTAGCAATAAGAGTTCAAGCAGACAAATCCATCTTTTACAAATGCGCCTTCGATGGCTACCAAGACACACTCTACGCTCACACCATGCGTCAATTCTACCGCGACTGCACCATCTCCGGCACCATCGACTTCATCTTCGGCGACGCCGTATCCGTCTTCCAAAACTGCACCTTCCTCGTCCGACCACCAATGCAAAACCAGCAATGTATCGTCACAGCGCAAGGCCGAAAGGAAAGGCACCAACCTTCAGGGATAGTCATCCATGGCGGCTCAATCGTGGCGGATCAACCGACAGGAAAAAAATCAATAGATCATAGTAAGGAGAAAGAAAAAGTGAAATTCGATAGCAAAGCTTACTTAGCGCGTCCATGGAAGAATTTCTCGAGGACGGTGTTCTTGGAAACCTACATCGATGATTTGATTGTGCCTGAAGGGTACATGCCATGGCAAGGGCCAGAAGGTAACACGGGCATGGACACTTGCTTCTATGCAGAGTATAAAACCACTGGACCCGGTTCGGATGTAACGAAGCGCGTGAAATGGCTTGGAATCAAGCACCTCAGTGAAAGTTCTATAAGCAAGTACATGCCATCAAGGTTCTTCCATGGCGATGATTGGATTGAGATTACTAAGATTCCTTACTCCCCGGGCTTAACTAATTTTACCAAGCACAAAACTTAA 1788 0.4597 MDDSRRNELQESANSKRRIALIGVSTVILVAMVVAVTVGVTQTDNGDEKSNKDKNHMASTVKAVTALCQPTDYKKECEESLTAEAGNTTEPRELIKIAFNVTIQKIGVGLQKSHLLQEAEKEPRAKMALDTCKQLMNLSISEFTRSLEGISQFNLNNLDEILTSLKVWLSGAVTYQETCLDAFQNTTSHAGQKMKEALTNSTKMSSNALSIVTELANTFSQLNEKNEKDESRRHLTDDLPPWVDYGAGVRRLLNSSPRKMQPNLIVAKDGSAKFSSINQALKKVPMKNTKPFVIFIKKGVYKEYVEVTREMRHVVFIGEGSDKTRITGSKNFIDGVNTYKTASVAILGDYFTAIHMGFENTAGPQKHQAVAIRVQADKSIFYKCAFDGYQDTLYAHTMRQFYRDCTISGTIDFIFGDAVSVFQNCTFLVRPPMQNQQCIVTAQGRKERHQPSGIVIHGGSIVADQPTGKKSIDHSKEKEKVKFDSKAYLARPWKNFSRTVFLETYIDDLIVPEGYMPWQGPEGNTGMDTCFYAEYKTTGPGSDVTKRVKWLGIKHLSESSISKYMPSRFFHGDDWIEITKIPYSPGLTNFTKHKT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc693g00003 595 Pfam Pectinesterase 263 573 IPR000070 GO:0030599|GO:0042545
Stsc693g00003 595 Gene3D - 257 587 IPR012334 -
Stsc693g00003 595 SUPERFAMILY Pectin lyase-like 261 586 IPR011050 -
Stsc693g00003 595 ProSitePatterns Pectinesterase signature 1. 288 307 IPR018040 -
Stsc693g00003 595 Pfam Plant invertase/pectin methylesterase inhibitor 63 211 IPR006501 GO:0004857
Stsc693g00003 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 217 IPR035513 -
Stsc693g00003 595 NCBIfam pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857
Stsc693g00003 595 PANTHER PECTINESTERASE 28 577 - -
Stsc693g00003 595 FunFam Pectinesterase 60 216 - -
Stsc693g00003 595 FunFam Pectinesterase 257 587 - -
Stsc693g00003 595 CDD PMEI-like_3 66 217 - -
Stsc693g00003 595 SMART PMEI_2 59 211 IPR006501 GO:0004857
Stsc693g00003 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 215 IPR035513 -
Stsc693g00003 595 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc693g00003 Stsc-Chr693 10175 14116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc693g00003 16 587 Carbohydrate Esterase AT3G05610 48.606 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc693g00003 K01051 - gmx:100794799 770