Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc67g00016 ATGGCCTCTCATTCTCCGAAAGGAGAATTAGGCCCTTTCATGAGTCATCTCATTCTCTTCCTCATTCTCATTCTCATATCCATTATCAACCCTTCACACCAATGGCAATCTGAATACAAGGAAGAAGACAAGTCTCGGTTCCTCCCTCAATCAAATCCGAGGCTCTCAAAAGCTTACATAGCACTCCAAGCATGGAAGCACGCAATAACCTCAGACCCAAAGAACATGACCCTGGACTGGTGTGGACCCCACGTATGCAACTACACCGGAGTCTACTGTGCACCAGCACCTGATGACCCCCACATATACACCGTTGCAGGAATAGACCTAAACCACGGCAAAATTGCCGGTTCATTACCAGAACAACTTGGCCTCTTAACCGACTTATCACTCTTCCACATCAACTCTAACCGTTTCTGTGGCTCCCTTCCAACCTCCTTCAACGGCCTCAAACTCCTCTTCGAGCTTGACGTCAGCAACAACGATCTCTCAGGTCCCTTTCCGGAAGTTGTGTTATGCCTCCCTTCGCTCAAATACCTGGACATAAGGTTCAACAACTTCTACGGCGATGTCCCCACGCGCCTCTTCGACCTCAAACTCGACGCGCTCTTCATCAACAACAACAACTTCCAATTCTCCTTGCCTGAGAATTTCGGTAACTCCCCGGCCTCGGNNNNNNNNNNCCTGAGGGGATGTATTCCGTCGAGTGTGGCGAAGATGAAGAAGACGCTGAACGAGATCATAATTACGAATAGCGGGATAACGGGTTGTTTGCCACGTGAGATAGGGTTGTTGGATAGAGTAACGGTTTTTGATGTGAGCTTTAACAAGATCGTTGGGGAATTACCTGAATCGATTGAAGGGATGAAGAAGTTGGAACAGTTGAACGTGGCGCATAACATGCTATCTGGCACCATTCCCGAGAGTGTGTGCAACTTGCCGAGGCTGCAGAACTTTACGTACTCGTATAACTACTTCTGCGATGAATCTCCGCTGTGCTTGAAGCTTCCGGATAGTGATGATCGCAAGAATTGTATTCCTTATAGGCCGCTGCAACGCTCCCTTCACGAGTGTGCCGCTTTTCTTAAACATCCGGTTAATTGTGCTACCTTTGGTTGCTCACCTCCACCTCCACCACCACCTCCGCCTCCTCCTCCTCCTCCTCCTCCACCTCCACCTCCACCTCCACCTCCACCACCACCTCCACCTCCACCTCCGCCACCACCACCACCTCCTCCTCCGCCTCCACCTCCGCCACCACCACCACCTCCTCCTCCTCCTCCACCTCCACCTCCTCCACCGCCGCTGCATCCCCCAACGCCATACTACCACTATCCGTGA 1341 0.5108 MASHSPKGELGPFMSHLILFLILILISIINPSHQWQSEYKEEDKSRFLPQSNPRLSKAYIALQAWKHAITSDPKNMTLDWCGPHVCNYTGVYCAPAPDDPHIYTVAGIDLNHGKIAGSLPEQLGLLTDLSLFHINSNRFCGSLPTSFNGLKLLFELDVSNNDLSGPFPEVVLCLPSLKYLDIRFNNFYGDVPTRLFDLKLDALFINNNNFQFSLPENFGNSPASXXXXLRGCIPSSVAKMKKTLNEIIITNSGITGCLPREIGLLDRVTVFDVSFNKIVGELPESIEGMKKLEQLNVAHNMLSGTIPESVCNLPRLQNFTYSYNYFCDESPLCLKLPDSDDRKNCIPYRPLQRSLHECAAFLKHPVNCATFGCSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLHPPTPYYHYP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc67g00016 446 MobiDBLite consensus disorder prediction 373 446 - -
Stsc67g00016 446 FunFam Leucine-rich repeat extensin-like protein 1 59 220 - -
Stsc67g00016 446 Gene3D Ribonuclease Inhibitor 57 223 IPR032675 -
Stsc67g00016 446 Gene3D Ribonuclease Inhibitor 224 345 IPR032675 -
Stsc67g00016 446 SUPERFAMILY L domain-like 61 335 - -
Stsc67g00016 446 Pfam Leucine rich repeat 129 187 IPR001611 GO:0005515
Stsc67g00016 446 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 21 441 - -
Stsc67g00016 446 PRINTS Proline rich extensin signature 375 391 - -
Stsc67g00016 446 PRINTS Proline rich extensin signature 392 409 - -
Stsc67g00016 446 PRINTS Proline rich extensin signature 410 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc67g00016 Stsc-Chr67 124127 125741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc67g00016 49 379 Leucine-rich Repeat extension Gene Families AT3G22800 66.667 1.28e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc67g00016 - - gmx:100818195 573.548