Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc678g00002 ATGGAAAAGAAGGGAAAAATCATAGTATCAGTGATTGTTATTTCGCTCATCATTGCTTTGGGTGTTGCCATTGGAGTCATCATTTCAGTTAAAAAGAAAAGCGAAGAGTTGCAAAACACCAAAGAAAGGGTCACGAATCTCATGTGTCACAATACAGAAGAGGAGTACCAAAATCTCTGCCATGAGGTTCTTCGCAAAGTTGACGATTCGTCTTCCAACGACCCCAAAGCATACATCAATACTGCCGTGGACGAAATCAGAAACGCCATCAACAATGCCATAAACAGGTTGATGTCAGAGGAGTTCTCCAAAGAACATGATAAAGGAATTAACATGGCAATTGATGGTTGCAAAGAAGTCATGGAATCTGCATTGCGCAGCACCGACCTTATCTCTGATGTTCTTCACAACAATAACGACATTAACTTTGTTCAAGCTCAAAGCCCTGACCTCAAGAATTGGCTTAGCTCTGTTATCTCATATCAGCAATCTTGTATCGACATTTTCGAGGATGATAAAGAAGGAGAGTTGAAAATCAAAGAAGAATTGCAAAAGCAGAGTTTGGATCGGGTTCAGAAGCTTTCTGTGATAACTCTGGACATTGTTGCTGGCTTGGCTAAGATCGTTCAAGATCTTGGTTTGAATATCGAAACGAAACCAAGTTCTTCTTATTCTGGGCGAGTTCTTCGTGAAGAGGGTGGTGATGATGATAACGAGGGGTTCCCTGATTGGATTTCGTCTACGGATCGCATTCTGTTAGCAAAAGATGTAAAGTTACATGTTCCGAATGTAGTGGTTGCTAAAGATGGTAGTGGAAACTTTAAGACAGTTCAGGGTGCAATTAACTCGTACCCAAAGGGAAAGAATTTTCAAGGAGGAAGGTTCATTATCTATGTTAAGGGTGGGATCTACAAGGAGAATTGTACTGTTCCATCTTACGCAATGAATATTTTCATGTATGGTGATGGCCCTACTAAGACCATTATCACTGCTAGCATGAACAATGCCACTATGGGTTTGAAGACCATGTTTACTGCCACTTTCGTCAATAAAGCGGGAATGTTTCTTGCGAAGGACCTGAGGTTTGAGAACGCAGCTGGACCTCAAGGGCACCAAGCAGTTGCACTGAGAAATGTAGGAGATTTTTCAGCCTTCTTAAACTGTCACATCCATGGTTATCAAGACACTCTGTATGTTCAGGCCAACAGACAATTTTATCGCAACTGTGAAATTGCTGGGACAGTTGACTTTATCTTCGGTACATCCCTCGCCTTGATCCAAAGAAGCAAGCTCATCGTGAGGAAGCCTTTGAGTACTCAATTCAATATATTGACTGCAGATGGTACTGTCTATAAGAACATGACTACTGGCATTGTGATTCAGGAATGCGAAATCGTTCCAGATCCTTTGTTCGATCGTGTGAAGTACCAGGTGAAAACTTATTTAGGTAGGCCATGGAAGGAAGGGTCTAGAACAATAATCATGGAGTCCTATCTTGGTGACTGGATTGATCCAGAAGGATGGGCTCCTCATCAAGGTAATGAGGTTAATGGTACCGTAGATTATTGTGAGTATGGAAACTCTGGACCTGGTGCTTCAGTTCAAAGAAGAATCAAGTGGAAGGGTTATCGTGGTATCATCAGCAAGAATGAAGCCAAACGATTCACTCTGGGTGAATTCCTTAAGGGTGGACCTAACAATAGTGCTGAGAAATGGTTGACCGCTCTTGGTGTTCCTTTTGAGAGTGGTTTTTTAAGACCATAA 1764 0.4184 MEKKGKIIVSVIVISLIIALGVAIGVIISVKKKSEELQNTKERVTNLMCHNTEEEYQNLCHEVLRKVDDSSSNDPKAYINTAVDEIRNAINNAINRLMSEEFSKEHDKGINMAIDGCKEVMESALRSTDLISDVLHNNNDINFVQAQSPDLKNWLSSVISYQQSCIDIFEDDKEGELKIKEELQKQSLDRVQKLSVITLDIVAGLAKIVQDLGLNIETKPSSSYSGRVLREEGGDDDNEGFPDWISSTDRILLAKDVKLHVPNVVVAKDGSGNFKTVQGAINSYPKGKNFQGGRFIIYVKGGIYKENCTVPSYAMNIFMYGDGPTKTIITASMNNATMGLKTMFTATFVNKAGMFLAKDLRFENAAGPQGHQAVALRNVGDFSAFLNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSLALIQRSKLIVRKPLSTQFNILTADGTVYKNMTTGIVIQECEIVPDPLFDRVKYQVKTYLGRPWKEGSRTIIMESYLGDWIDPEGWAPHQGNEVNGTVDYCEYGNSGPGASVQRRIKWKGYRGIISKNEAKRFTLGEFLKGGPNNSAEKWLTALGVPFESGFLRP 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc678g00002 587 PANTHER PECTINESTERASE 17 574 - -
Stsc678g00002 587 Pfam Plant invertase/pectin methylesterase inhibitor 48 201 IPR006501 GO:0004857
Stsc678g00002 587 SUPERFAMILY Pectin lyase-like 263 580 IPR011050 -
Stsc678g00002 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 206 IPR035513 -
Stsc678g00002 587 NCBIfam pectinesterase inhibitor domain 20 203 IPR006501 GO:0004857
Stsc678g00002 587 SMART PMEI_2 39 201 IPR006501 GO:0004857
Stsc678g00002 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 202 IPR035513 -
Stsc678g00002 587 Pfam Pectinesterase 263 563 IPR000070 GO:0030599|GO:0042545
Stsc678g00002 587 CDD PMEI-like_3 47 207 - -
Stsc678g00002 587 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Stsc678g00002 587 Gene3D - 259 584 IPR012334 -
Stsc678g00002 587 FunFam Pectinesterase 4 260 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc678g00002 Stsc-Chr678 17536 19456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc678g00002 3 584 Carbohydrate Esterase AT5G49180 36.102 2.58e-115 353