Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc672g00002 ATGGATTCTCTTCTCTCACTCCAAACCCCAAACAACCACCCCCCTCAGCCTCAGCCTCAGCCTCACTCACCCCCACCAGGCCTCAACCCAACGCCGTTACCGTTACCGTTACAACCAACACAAACGCCGTTACTAGTCCCAAAGCCAGAGCCTCTCGATGATTTTTTCTCGTATTCCCAACAATACCCTCACTGGTTCCCTCAACAACCACAACCTAACGAATTTGAGTTACACGCGCCACCCTTCGCGTCTGGTTCTTCACAAGAACAAGAAGACTCCGAGCTTTACAACCACTTCTTCCGAGTCTCTCAGCTCTTCCGTACGGCTTTCTCTGATACTCTCTTCCAAAACGACGCCGTTCCTGAACCCGTGACACCGCAACCGCAACCAGAGTTACAGCCGAGTCTTCAAGATTCTATGTCACATGCCTCTAATTCGCAACCCGAACCCGAACCTGAACCCGAGGCAACGCCCGAAGCAGATTCACGCGCCTTGGTTGCCGTTCCGCCGCCCGAGTCGTTGACCGTCGCGGCTCCGGCGAATCGCGCGAGCAAGAAGAAGGAGCTCGTGAGAGTCTCCGAACTCAGCTTTCAGGAGCAGCTTCATTTCCGCGGCATCGTGAGACGAACGAGGATGATCTACGACACGATCCGCGTCCTCATCACAATCGAGGAGGAGAAGAGAGCTGCCGCTGCCGCCGCCGAGAAGGCAAAGAAAGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGTTTCTATTGCCGCCGCCGGTGCAGCTGAATCCACCGGTGAATATTCTGCCGCAGCTGAAACCACCGTGTCCGTTGCCGTGCCAGCTCCTGAATCTGCTGGAGAACAACAATCGGCCACTGACATTGGCGCCGGAAATAATCCGCCCGAAGCAGTCAACAACGACGAAGCTGAAGGGAAGAAGCGGCTGCGAGGGGATCTAATTGCAGCGCAAATGATGAAGAAGCAGCATCTATGGCTGAACCGCGATAAGCGAATCGTCGGAGCTATTCCTGGAATTTATGTTGGCGATGTGTTCCTCTTTCGGATGGAATTGTGTGTCCTTGGATTGCACGGTCAGATTCAGGCTGGCATTGATTACCTGGCAGCTTCCATGAGTCCCAACAATGAGCCAATTGCGACGAGTGTCATTATCTCCGGCGGCTACGAGGACGATATGGACCAAGGAGATGTGGTGGTCTACACTGGACAAGGCGGGCAGGCCACGAATTCGGTGAGGCAAGCCACACACCAGAAGATGGAGAGTGGGAACCTGGCATTGGAGAGGAGCATGTATCATAATATTGAGGTGAGAGTGATTAGAGGGATGAAATATGAAGGAGCTGCCTCGAAATCCGGTAAGATTTATGTCTATGATGGTTTGTATAGGATTACTGAATGCTGGTTTGATGTTGGAAAGTCTGGTTTTGGTGTTTTTAAGTATAAGCTTGTTAGGATTGAAGGGCAGGCTAAGATGGGTAGTGCTATTCTTAAGGAAGCTAGGGAAATTAGGAAAAGTGGAGTGGATTTTCAACCAATGTATTGTCTTTCTGTTGATATTTCAAACGGGAAGGAGAAGGTTCCGGTTCGGCTCTTTAACGACATTGACGATATTAAGGATCCGCTTTATTTTGATTATGGTCGGACGACTGGTTTCCCGCCATTTGTGCATCATCAGACCGGGACAGCTACTGGGTGCGGTTGTGTCAGCGGTTGTAAAGATGAATGCTTTTGCAGTATGAAGAATGGTGGCGAGTTTCCTTATAATCTGCAGGGGATCCTTGTGAGGGGGAAGCCTTTGATTTTTGAGTGTGGACCTTTTTGTAGTTGTCCGCCTAATTGTAGAAACCGTGTGTCACAGAATGGGATGAAGAACAGGTTGGAGGTTTTTAGGTCTAGGCAGACGGGTTGGGGAGTAAGGTCCTTGGACCTTATTCAAGCTGGTTCTTTTATCTGTGAGTATGCTGGGGTTGTTTTGACTAGGGAGCAAGCCCAGCTTTTGACGATGAATGGTGATGTGTTGATATATCCTAATCGGTTTTCTGAAAGGTGGGCAGAATGGGGTGATTTGTCTCCAGTAAACCCGGAATATCAGCGTCCATCTTATCCGTCAATTCCTCCTTTGGATTTTTCTCTGGATGTGTCAACTGTCAGAAATGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTGATGGTTCAGTTTGTTCTGTTTGATCACAACAATTTGATGTTCCCTCACATTATGCTGTTTGCAATGGAGAATATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAGCTCTCCATATGTAATGGGTGA 2355 0.4964 MDSLLSLQTPNNHPPQPQPQPHSPPPGLNPTPLPLPLQPTQTPLLVPKPEPLDDFFSYSQQYPHWFPQQPQPNEFELHAPPFASGSSQEQEDSELYNHFFRVSQLFRTAFSDTLFQNDAVPEPVTPQPQPELQPSLQDSMSHASNSQPEPEPEPEATPEADSRALVAVPPPESLTVAAPANRASKKKELVRVSELSFQEQLHFRGIVRRTRMIYDTIRVLITIEEEKRAAAAAAEKAKKAAAAAAAAAAVSIAAAGAAESTGEYSAAAETTVSVAVPAPESAGEQQSATDIGAGNNPPEAVNNDEAEGKKRLRGDLIAAQMMKKQHLWLNRDKRIVGAIPGIYVGDVFLFRMELCVLGLHGQIQAGIDYLAASMSPNNEPIATSVIISGGYEDDMDQGDVVVYTGQGGQATNSVRQATHQKMESGNLALERSMYHNIEVRVIRGMKYEGAASKSGKIYVYDGLYRITECWFDVGKSGFGVFKYKLVRIEGQAKMGSAILKEAREIRKSGVDFQPMYCLSVDISNGKEKVPVRLFNDIDDIKDPLYFDYGRTTGFPPFVHHQTGTATGCGCVSGCKDECFCSMKNGGEFPYNLQGILVRGKPLIFECGPFCSCPPNCRNRVSQNGMKNRLEVFRSRQTGWGVRSLDLIQAGSFICEYAGVVLTREQAQLLTMNGDVLIYPNRFSERWAEWGDLSPVNPEYQRPSYPSIPPLDFSLDVSTVRNVACYMSHSSSPNVMVQFVLFDHNNLMFPHIMLFAMENIPPMRELSLDYGVADEWTGKLSICNG 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc672g00002 784 Gene3D SET domain 496 783 IPR046341 -
Stsc672g00002 784 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 120 784 IPR025794 GO:0016571
Stsc672g00002 784 SMART preset_2 519 611 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc672g00002 784 SMART set_7 627 776 IPR001214 GO:0005515
Stsc672g00002 784 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 143 771 - -
Stsc672g00002 784 Pfam SET domain 638 770 IPR001214 GO:0005515
Stsc672g00002 784 MobiDBLite consensus disorder prediction 118 162 - -
Stsc672g00002 784 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 318 504 - -
Stsc672g00002 784 Gene3D - 334 495 IPR036987 -
Stsc672g00002 784 Coils Coil 220 243 - -
Stsc672g00002 784 ProSiteProfiles Pre-SET domain profile. 566 624 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc672g00002 784 SUPERFAMILY PUA domain-like 319 500 IPR015947 -
Stsc672g00002 784 MobiDBLite consensus disorder prediction 1 90 - -
Stsc672g00002 784 ProSiteProfiles SET domain profile. 627 770 IPR001214 GO:0005515
Stsc672g00002 784 ProSiteProfiles YDG domain profile. 337 487 IPR003105 -
Stsc672g00002 784 MobiDBLite consensus disorder prediction 12 46 - -
Stsc672g00002 784 MobiDBLite consensus disorder prediction 278 308 - -
Stsc672g00002 784 SUPERFAMILY SET domain 512 782 IPR046341 -
Stsc672g00002 784 MobiDBLite consensus disorder prediction 131 150 - -
Stsc672g00002 784 SMART G9a_1 332 491 IPR003105 -
Stsc672g00002 784 Pfam SAD/SRA domain 336 491 IPR003105 -
Stsc672g00002 784 Pfam Pre-SET motif 522 619 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc672g00002 Stsc-Chr672 7016 11459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc672g00002 313 772 Su(var)3-9 homologs AT5G04940 42.489 2.44e-107 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc672g00002 SAD_SRA 2.3e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc672g00002 K11420 - aip:107626851 1190.64