Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc670g00011 ATGGAACCATACCCTTATTCTCCCAAGGGAAGTGGAGCCTTATATTGGGAATCCTGTAGGTCTCAGTTGGAGGGATCAACATCATTAGATGGTGATATGAGCAATTCATTTTCAGATGATATGGCTTGTAGCTTCTCCGAGCTCATGAACTTTGATCCTTATGCTGGCTTGTGCAATAGCCCATTGATCGATCGGGTTTTCAGTAATGGCCTTCCATCAACATATCCATCTACCCCTGGGTTCAATCTAGAAGAACACAACAGTAGCCAATTCTTCATGACAGAAATGAATGGAAATTTCAACACTAAACAAGGCTCCCCTGGTTATGGGGAGAAACTTACTTTTCAACAAATGGACACCCTACTTGGTTTCTTTGATAGTACAGATGATACACATAGTTTAAGTTCTAAGCAAAAAACTAATGGCTCTTCTCAACAACTTGATACCTGTGACGCCGTTGGCAATTATATCGTGACCAAGCCACCTAGTTTGTCACTTGATGAGAGAATGTTGAAAGCCTTGTCCTTCTTAATGGAATCAGCTGGTGGTGGAATATTGGCACAGGTTTGGGTTCCTATAAAGGATGGTGATCAATTCTTCTTGAGCACAAGTGAACAACCTTATCTACTAGACCAAATTCTTGCCGGATATCGTGAAGTCTCAAGAACATACACATTTTCTGCTGAAGGAAAATCGGGTTCTTTCCCAGGACTTCCTGGTCGTGTGTTTATGTCCAAAACTCCTGAGTGGACTTCCAACGTTGGTTATTACAATAAGAATGAGTACTTGAGGATGGATCATGCGATTAATCATGAGGTTCGTGGATCGATTGGTTTACCCATATCTGATATGCACTCTGAACTGCCATGCTGTGCTGTACTAGAGCTTGTCACTACAAATGAAAAGCATGATTTTGACAAGGAAATGGATATTGTTTGTCATGCACTACAGAATGTAGATCTAACGGCTAATATGCCTCCTCGGCTTCTTCCTCAGTGTCTTTCAAACGGCAATCGTGCTGCTTTAACAGCCATAATTGATGTCTTAAGATCCGTTTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCTTGTTGTGTCAACGAAGACACAGAAGGTAAAGATACAAAGATACACATTAAAGAGGGTCATTCGAGTCCTCGTGAAAAGAACATCCTGTGCGTCGAAGAATCTGCATGCTATATAACTGATAATGCAATGAAAGGATTTGTTCATGCTTGCATTGAACACCATCTTGAGGAAGGGAAAGTTGCAATTAGGCTGAGGAGTACTTATACTAATGATGATGATTACATACTGGAATTCTTTTTGCCTGTCAACATGAAAGGGAGTTCAGAGCAGCAGCTTCTCTTAGACAACCTCTCAGGTACCATGCAGAGAGTTTGTAGGAATTTAAGAACGGTTTCAGATGAGGAATTATCAAGAATGGAAGGCTCACAAGTAGGAATTGAAAACAAAAATGTCCCGGGAATTTATCCTATGTCCAGTAGAAACTCCCAGATACCATTAACAAACGGTAATCATGATTCAGTCCGTAAGATGTCCATCAAGGAATCTTACCATGGAAACAATGGAATCGAGTCTTCTCATAACCAGGAAAGGAATGGATCAAGAAGGATGGTTGAGAAAAAGAGAACATCTGAGAAGAAAGTTAGTTTGAATGTTCTTCAGCAACACTTTTCTGGTACTCTAAAGGATGCTGCTAGGAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGAAAGAAGGAATTTCAAGATGGCCATCCCGGAAGATCAAGAAAGTGAACCGATCGTTGAAGAAAATACAGATCGTGCTCGACAGTGTCGAAGGAGTGGAAGGAAGGTTGAAGTTTGATCCCTGTATGGGGGCACTTGTATCAAGAGAAGGAGAACCAATCCTCCAAGAAATTAATGCACAAGAGACTCTTTTGCACCCTGAGAAAATTAAGAGCCCTGAAACTGTTAATGCAAAAGGTTCCTTACTTTATAGGGATGATGATGGAGTTGCTGAGCATAACCACCCTACTTCTTCAGGCTTTACAAACTCATCTGATGGTTCTGGTTCAAACCAGAAGCAGAACTTGAAAGGCAAATCAATCATGGTTGATAAAAGTGGGTTGAAAATTATTCAAGCCAAAGCTACCTATGGGGAAGACACAGTTCGTTTCAAGTTTGATCCATCTTGGGGTTGTTTAAAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAACGGATCGTTTCAGCTCAGATATGTAGATGATGAACAAGAGTTGGTGAGATTGTTAGATGACTCAGATTTTCAGGAGTGTATTGAAATAGTGGATGAAGCTGGGAAACGTAGTGTTAGGTTTGTTGTTCGTGACATGCCATGCAATTTAAGCAGCGCCAGCAGCAGTAGTTGCTACCTAGGATGTAACTCATAG 2466 0.4108 MEPYPYSPKGSGALYWESCRSQLEGSTSLDGDMSNSFSDDMACSFSELMNFDPYAGLCNSPLIDRVFSNGLPSTYPSTPGFNLEEHNSSQFFMTEMNGNFNTKQGSPGYGEKLTFQQMDTLLGFFDSTDDTHSLSSKQKTNGSSQQLDTCDAVGNYIVTKPPSLSLDERMLKALSFLMESAGGGILAQVWVPIKDGDQFFLSTSEQPYLLDQILAGYREVSRTYTFSAEGKSGSFPGLPGRVFMSKTPEWTSNVGYYNKNEYLRMDHAINHEVRGSIGLPISDMHSELPCCAVLELVTTNEKHDFDKEMDIVCHALQNVDLTANMPPRLLPQCLSNGNRAALTAIIDVLRSVCHAHRLPLALTWIPCCVNEDTEGKDTKIHIKEGHSSPREKNILCVEESACYITDNAMKGFVHACIEHHLEEGKVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQRVCRNLRTVSDEELSRMEGSQVGIENKNVPGIYPMSSRNSQIPLTNGNHDSVRKMSIKESYHGNNGIESSHNQERNGSRRMVEKKRTSEKKVSLNVLQQHFSGTLKDAARSIGVCPTTLKRICRKEGISRWPSRKIKKVNRSLKKIQIVLDSVEGVEGRLKFDPCMGALVSREGEPILQEINAQETLLHPEKIKSPETVNAKGSLLYRDDDGVAEHNHPTSSGFTNSSDGSGSNQKQNLKGKSIMVDKSGLKIIQAKATYGEDTVRFKFDPSWGCLKLYEEVATRFKLQNGSFQLRYVDDEQELVRLLDDSDFQECIEIVDEAGKRSVRFVVRDMPCNLSSASSSSCYLGCNS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc670g00011 821 MobiDBLite consensus disorder prediction 686 708 - -
Stsc670g00011 821 Gene3D - 720 804 - -
Stsc670g00011 821 PANTHER PROTEIN NLP8 425 814 IPR045012 GO:0003700
Stsc670g00011 821 ProSiteProfiles RWP-RK domain profile. 542 627 IPR003035 -
Stsc670g00011 821 MobiDBLite consensus disorder prediction 678 708 - -
Stsc670g00011 821 ProSiteProfiles PB1 domain profile. 721 803 IPR000270 GO:0005515
Stsc670g00011 821 Pfam RWP-RK domain 560 607 IPR003035 -
Stsc670g00011 821 SUPERFAMILY CAD & PB1 domains 721 805 - -
Stsc670g00011 821 MobiDBLite consensus disorder prediction 528 557 - -
Stsc670g00011 821 Pfam PB1 domain 723 802 IPR000270 GO:0005515
Stsc670g00011 821 MobiDBLite consensus disorder prediction 541 557 - -
Stsc670g00011 821 SMART PB1_new 721 803 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc670g00011 Stsc-Chr670 24579 29425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc670g00011 716 818 NLP Transcription Factor Family AT2G43500 58.252 1.90e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc670g00011 PB1 1.7e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc670g00011 - - aip:107613413 1395.95