Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc66507g00001 TTTGAGGGTAGTGCCTTCCTTGCAAATGTCAGAGAAATTTCAACCCAAAGCCATGGCTTAGTTCAACTACAAGAAGCACTTCTCTCGTTGATTTTGAGCCGTAGAGATTTCAAAGTAGGCAACAAAGATAGAGGGATTAATCTGATAAAGAACAGGCTTTGTTGCAAAAAAGTTCTCATAGTTGTTGATGATTCTGATTCATTGGAGCAACTTGAATCATTGGTTGGAGACTGCAGTTGGTTTGGATCAGGCAGTAGGATTATCATAACAACAAGAGATGAGCATTTGCTAATTGCTCACAATGTGGAAACTAACTACAAGGTGAACGAGTTAAGCCATGACCATGCTCTTGAACTCTTTAGTTGGTTTGCTTTCAAAAAGCCATGTCCTGCATCAAATTATGAGGGATTGTCCTCCCACATATTAAACTATGCCAAGGGCTTGCCATTGGCACTGACAGTTTTGGGGCCCTACCTCTGTGGTAGAGGGAAAGCCGAGTGGATAAGTGCACTAGCTAAATTGAAAAAAATTCCAAACAAACATATCTATGCAATACTTAAAATCAGCTTTGATGGATTAGAAGCGGATGAAAAGGCCATTTTTCTGGATATTGCATGTTTTTTCAAGGGAGAAGACAAAGAATATGTGAAAATGATACTCGACGCCTGTGACCTGCACTGGGATAATGGCTTTGGAGTTCTAATGGATAAGTCTCTCATCACTATGCAACTGAACAAGCTTTGGATGCATGATCTGCTACAGGAAATGGGTAAAGAAATTGTGCGCCAAGAATCTCCCGAAGATCCTGGTAAACGTAGCAGGCTATGGTTTCACGAGGATGTACTTCATGTATTGAACCAAAACACGGGAACTAACAACATTGAAGGCATAAAGCTTGATCTACCTAAACAAGATAACATAAATGGCAATGCCCTAACAAAGATGAAAAGACTTAGAGTTCTTATGATCAACAATGCACATGTTACAGATGACATTCAATATCTTTCTGATGAGCTGAGACTAATCGATTGGCCAGGATACCCATCTTCAACTCTACCACAAAATTTCCATCCAAGAAGACTAGTTTCCTTAAATATGAGACATAGTCACATCAAACATTTGTGGAAGGGAGCAAAGGTATGGAGTTGGTCTTTATTATATTTTTAA 1167 0.3933 FEGSAFLANVREISTQSHGLVQLQEALLSLILSRRDFKVGNKDRGINLIKNRLCCKKVLIVVDDSDSLEQLESLVGDCSWFGSGSRIIITTRDEHLLIAHNVETNYKVNELSHDHALELFSWFAFKKPCPASNYEGLSSHILNYAKGLPLALTVLGPYLCGRGKAEWISALAKLKKIPNKHIYAILKISFDGLEADEKAIFLDIACFFKGEDKEYVKMILDACDLHWDNGFGVLMDKSLITMQLNKLWMHDLLQEMGKEIVRQESPEDPGKRSRLWFHEDVLHVLNQNTGTNNIEGIKLDLPKQDNINGNALTKMKRLRVLMINNAHVTDDIQYLSDELRLIDWPGYPSSTLPQNFHPRRLVSLNMRHSHIKHLWKGAKVWSWSLLYF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc66507g00001 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 374 IPR044974 GO:0006952
Stsc66507g00001 388 SUPERFAMILY L domain-like 261 382 - -
Stsc66507g00001 388 Gene3D - 110 194 IPR042197 -
Stsc66507g00001 388 PRINTS Disease resistance protein signature 145 159 - -
Stsc66507g00001 388 PRINTS Disease resistance protein signature 313 329 - -
Stsc66507g00001 388 PRINTS Disease resistance protein signature 52 66 - -
Stsc66507g00001 388 SUPERFAMILY "Winged helix" DNA-binding domain 181 285 IPR036390 -
Stsc66507g00001 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 204 IPR027417 -
Stsc66507g00001 388 Pfam NB-ARC domain 35 178 IPR002182 GO:0043531
Stsc66507g00001 388 Gene3D - 1 106 IPR027417 -
Stsc66507g00001 388 Gene3D Ribonuclease Inhibitor 270 380 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc66507g00001 Stsc-Chr66507 9 1322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc66507g00001 11 380 WRKY Transcription Factor Family AT4G12020 34.474 1.28e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc66507g00001 - - ahf:112749316 694.501