LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc663g00002	ATGCGCAACACCGATTGCGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGAGCTGAATGCGAATACCGGCATAACGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCTGGCAGTTGCCTCAATCCAACATGTGCTTTCAGACACCCTCCATTGGATTGCCAGACTGGAGTTTCATCTGAGCCAACACAGTCTGCCATACCTGCAAATAAAACAATGTTTCCCTGTTATTTTTTCTTCAATGGATATTGCAATAAAGGAGACAGATGCTCATTTTTGCATGGGCATGATGATAGCTATTTCAATGTAAAGCCCGTAAAGAATGACAAGGGAGGCACTGATCCACCCAACCTAGAGAGTAAGGTGTCGTCAGGAACTGCCCCATCAACAACTGAAAATCATTCGAACCCAGCCTTAACTGCCCCAAAGGCTTTGCCCAGTGTGAAACCTCCACCTAAGGAAGACCTTCAACTATCCTTACCTAAAAATGTTCAACAGCAAGGTGATTGCGCTGCATATGCTGTTGAGCATAAAGAAGATACAATTACTGGGTCAGAGCCTTTGTATCCAGATGGAAGATTTGTTCATAACATCTCTCATCAATGCAGTGAGCAGTGTTCAGAGGAGCAAGTAAATGGTCACATAGAGCCTGATGAACGTTGGGAATCATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAGTCGGCGAACTTGGGCTATGAGGAGGATCCTGAATATCCACCTGATGGGGAACATGAGGAACTGAATGAACAATACTTGGGGTATGAATTTGAAAACGCAGTTGAGTATGATAATATGTGCCGCAAAGCTGACGTTCTGTATGAGCAAGAAATGTATGATGATTATAGATGTTTAGATAGGGATCTTACTGATGCTAACGGCAGAAGTGTTTGTGATTGTTCCAGTGACATAATCTTAGATTCTATGTTGAATAGGAAAAGGATTCGGATGAGTGATATAGCTACCTATGATGGGAAGTTAGATCTACGAGACCATCTGAAAAGACGAAGGGAAAGTAGTGGTCCTCCTGATGCATGTTTCATCAGACGACATGAATCCTCTTTGATGGTTCGAAACAGGGAAAGGCATCAAAGGCATTACAATGATCAGAGACTTAGGGGAAGATTGACATCACAAGTGGGATTTACCACTATAGACCCCATTGGAGAGGTTGAAAATCTTTCAGTTGCTAACAGGCAAAGGTTATTTAGAAATTCCCAGCAGCATTGGCCAAGGAAGCATTATAGAGAAAAGCCAGCTAAACGCCAGTTTCATTCATCTAATGATTCCAGGGGACCAGTTTACAAGCAAAGGAGATTTATTCACGAGTCCTCTACATTTTCAGGACCCAAGAGCCTTGCAGAAATTAGAGAAGAGAAGAAAAAGGCTGAAGGAAGTTTTCACTGTAAAAGCAAATCATCTGATTTTCAGGACCCCAAACCTCTTAGTGAAATTCTCAAGGGCAAAAGGAGTGTGGACGGAGTTTGA	1527	0.4283	MRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLDCQTGVSSEPTQSAIPANKTMFPCYFFFNGYCNKGDRCSFLHGHDDSYFNVKPVKNDKGGTDPPNLESKVSSGTAPSTTENHSNPALTAPKALPSVKPPPKEDLQLSLPKNVQQQGDCAAYAVEHKEDTITGSEPLYPDGRFVHNISHQCSEQCSEEQVNGHIEPDERWESSSPGFDVLVHDESANLGYEEDPEYPPDGEHEELNEQYLGYEFENAVEYDNMCRKADVLYEQEMYDDYRCLDRDLTDANGRSVCDCSSDIILDSMLNRKRIRMSDIATYDGKLDLRDHLKRRRESSGPPDACFIRRHESSLMVRNRERHQRHYNDQRLRGRLTSQVGFTTIDPIGEVENLSVANRQRLFRNSQQHWPRKHYREKPAKRQFHSSNDSRGPVYKQRRFIHESSTFSGPKSLAEIREEKKKAEGSFHCKSKSSDFQDPKPLSEILKGKRSVDGV	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc663g00002	508	SMART	c3hfinal6	75	101	IPR000571	GO:0046872
	Stsc663g00002	508	SMART	c3hfinal6	1	28	IPR000571	GO:0046872
	Stsc663g00002	508	SMART	c3hfinal6	33	56	IPR000571	GO:0046872
	Stsc663g00002	508	MobiDBLite	consensus disorder prediction	466	508	-	-
	Stsc663g00002	508	Pfam	Zinc-finger containing family	2	58	IPR041686	-
	Stsc663g00002	508	FunFam	Zinc finger CCCH domain-containing protein 17	1	57	-	-
	Stsc663g00002	508	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	2	505	-	-
	Stsc663g00002	508	ProSiteProfiles	Zinc finger C3H1-type profile.	75	102	IPR000571	GO:0046872
	Stsc663g00002	508	ProSiteProfiles	Zinc finger C3H1-type profile.	1	29	IPR000571	GO:0046872
	Stsc663g00002	508	MobiDBLite	consensus disorder prediction	111	161	-	-
	Stsc663g00002	508	SUPERFAMILY	CCCH zinc finger	75	100	IPR036855	GO:0046872
	Stsc663g00002	508	Gene3D	-	68	145	-	-
	Stsc663g00002	508	Gene3D	-	1	58	-	-
	Stsc663g00002	508	ProSiteProfiles	Zinc finger C3H1-type profile.	31	57	IPR000571	GO:0046872
	Stsc663g00002	508	MobiDBLite	consensus disorder prediction	122	145	-	-
	Stsc663g00002	508	MobiDBLite	consensus disorder prediction	459	508	-	-
	Stsc663g00002	508	Pfam	RNA-binding, Nab2-type zinc finger	80	100	-	-
	Stsc663g00002	508	MobiDBLite	consensus disorder prediction	420	445	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc663g00002	Stsc-Chr663	11884	14553	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Stsc663g00002		zf-CCCH_3	1.2e-10	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc663g00002	-		-	adu:107469835	904.049