Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc65g00006 ATGGCTGTTGAGCTCATGATGAGTGGTTACAGGAACGAAAACAGCAGCAGCAGCGGCTTCGTCACTTCCAAGGCTGAAGAGAACGCCGTCCAAGAAGCGGCGTCTGGGTTAGAGAGCGTTGAGAAGCTCATAAGGCTTCTCTCACAGACTCAGCACCAACGCTTTAACGCCGCTTCTTCTTCTTCTTCTGCCGTTAACTCCGATGATACGTTTTCGTTATCAATCGAGAGAGACTGCAAGGCCGTTGCGGACGTCGCCGTTTCCAAGTTCAAGAAAGTTATCTCTCTCCTTGGCCGAACCAGAACCGGCCACGCGCGTTTCAGAAGAGGACCTCTTCACGCGCCTTCTCAGCCCGAACCGTCGTCGACTCAGGAACACAGAGTCTTCCATGCGACGCCGCTGCAGCAGATCCCACCCCCTCCGCCGCCACCGCAACCGCAACCACAGCCACAACCACAGAGCCTCGTTAACCACCACCTGATTCACAAGAACGGCGTCGTTGAGAGATCGTCTTCGTCCAAGACTATTAACTTCTCCTACTCATCTGCTGCTAACTCGTTGTTATCGTCTCTCACCGGCGACGCCACCGCCGCCGGTGAAACCAAGCAGCAGAACCACCACCAGCAACAGCCGTCGTCGTCGTCGCCGGCACCGGCGTTTCAGATCACGAACCTGTCGCAGGTTTCGTCAGCGGGGAAGCCACCTCTGTCGTCGTCTTCGCTGAAGAGGAAGTGCAGCTCGGAGAATTTGGGTTCGGGAAAGTGTGGAAGCTCCTCTAGCCGCTGCCATTGCTCCAAAAAGAGCCGGAAAATGAGGATGAAGAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAAATGGCTGATATTCCGCCGGATGATTACTCTTGGAGGAAGTACGGTCAAAAGCCCATTAAAGGATCCCCTCATCCAAGGGGCTATTACAAGTGCAGCAGCGTTAGAGGGTGTCCAGCGAGGAAGCATGTGGAGAGGGCTCTTGATGATCCGTCTATGCTGGTAGTCACATATGAAGGAGAACATAATCACTCCCTCACTGCAGCTGATGCTACTAATCTCATCCTAGAATCCTCTTGA 1092 0.5412 MAVELMMSGYRNENSSSSGFVTSKAEENAVQEAASGLESVEKLIRLLSQTQHQRFNAASSSSSAVNSDDTFSLSIERDCKAVADVAVSKFKKVISLLGRTRTGHARFRRGPLHAPSQPEPSSTQEHRVFHATPLQQIPPPPPPPQPQPQPQPQSLVNHHLIHKNGVVERSSSSKTINFSYSSAANSLLSSLTGDATAAGETKQQNHHQQQPSSSSPAPAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRMKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLTAADATNLILESS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc65g00006 363 MobiDBLite consensus disorder prediction 194 262 - -
Stsc65g00006 363 ProSiteProfiles WRKY domain profile. 285 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc65g00006 363 MobiDBLite consensus disorder prediction 134 151 - -
Stsc65g00006 363 Gene3D WRKY domain 276 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc65g00006 363 MobiDBLite consensus disorder prediction 116 130 - -
Stsc65g00006 363 SUPERFAMILY WRKY DNA-binding domain 287 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc65g00006 363 SMART WRKY_cls 290 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc65g00006 363 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 356 IPR044810 GO:0003700
Stsc65g00006 363 Pfam WRKY DNA -binding domain 292 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc65g00006 363 Pfam Plant zinc cluster domain 242 288 IPR018872 -
Stsc65g00006 363 FunFam WRKY transcription factor 65 274 351 - -
Stsc65g00006 363 MobiDBLite consensus disorder prediction 194 269 - -
Stsc65g00006 363 MobiDBLite consensus disorder prediction 105 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc65g00006 Stsc-Chr65 44966 47172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc65g00006 26 348 WRKY Transcription Factor Family AT2G24570 45.210 5.75e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc65g00006 WRKY 3.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc65g00006 - - qsa:O6P43_033850 394.815