Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc656g00005 ATGGATTCTGCAAAATCTGCACAAAAGTTATGGGCAAAGACGCCGCTATGGAAGCGTGCCGAGCTTCTCCACAAGGCAGCAGCCATCCTCAAGGAACACAAGGCTCCAATTGCAGAGAGCCTGGTGAAAGAGATAGCAAAGCCAGCCAAAGATGCTGTCACTGAGGTTGTAAGATCTGGTGATCTTGTTTCTTACTGTGCTGAAGAAGGGGTTAGAATTCTAGGAGAGGGAAAATTTCTGGTATCAGATAGCTTCCCTGGAAATGAAAGGACCAAGTATTGCCTCACATCCAAGATTCCATTAGGAGTGATTTTGGCCATTCCACCATTTAACTATCCTGTTAACCTTGCTGTCTCAAAAATTGCTCCTGCTCTTATTGCTGGAAACTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTTCACATGGTTCATTGCTTCCACTTGGCTGGTTTTCCCAAAGGCCTAATCAACTGTGTTACTGGAAAAGGCTCAGAGATCGGTGACTTCCTTACAATGCATCCAGGTGTGAACTGCATAAGCTTCACTGGTGGAGACACCGGTATTGCAATTTCGAAGAAGGCAGGGATGATTCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCATGCATTGTGCTTGAGGATGCTGACCTTGATTTGGTAGCTGGAAACATCATTAAAGGAGGTTTTTCATATAGTGGACAGAGGTGCACTGCTGTAAAGGTAGTCCTGGTAATGGAATCCGTGGCAGATGCATTGGTAGAGAAAGTGAAAGCTAAGGTAGCAAAACTAAGTGTTGGAGCACCTGAGAATGACTGTGACATAACTCCAGTTGTGTCCGAATCGTCGGCGAATTTCATCGAAGGCCTAGTGATGGATGCAAAAGAGAAAGGAGCAACATTCTGCCAAGAATACAAAAGAGAAGGGAATCTGATTTGGCCTTTGCTACTTGACAGTGTTAAGCCTGATATGAGAATTGCATGGGAGGAGCCATTTGGTCCTGTTTTGCCGCTTATTAGGATCAATTCCATTGAAGAAGGAATCCATCACTGCAATGCCAGCAACTTTGGACTTCAGGGATGTGTGTTCACAAAGGATGTCAACAAAGCAATAATGATCAGTGATGCAATGGAAACTGGAACAGTTCAAATCAATTCTGCTCCTGCTCGTGGACCTGATCATTTTCCCTTCCAGGGTATAAAGGACAGTGGAATTGGATCACAAGGAATTACCAACAGCATAAACATGATGACCAAGGTGAAAACGACTGTCATAAACTTACCAAGCCCTTCTTATACCATGGGATAG 1317 0.4465 MDSAKSAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAESLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAGNIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLSVGAPENDCDITPVVSESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDSVKPDMRIAWEEPFGPVLPLIRINSIEEGIHHCNASNFGLQGCVFTKDVNKAIMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc656g00005 438 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 207 IPR016162 GO:0016491
Stsc656g00005 438 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 205 212 IPR029510 GO:0016491
Stsc656g00005 438 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1 221 - -
Stsc656g00005 438 SUPERFAMILY ALDH-like 2 429 IPR016161 GO:0016491
Stsc656g00005 438 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 209 399 - -
Stsc656g00005 438 CDD ALDH_F11_NP-GAPDH 1 429 - -
Stsc656g00005 438 PANTHER ALDEHYDE DEHYDROGENASE 1 437 - -
Stsc656g00005 438 Pfam Aldehyde dehydrogenase family 2 425 IPR015590 GO:0016491
Stsc656g00005 438 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 233 244 IPR016160 GO:0016491
Stsc656g00005 438 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 210 399 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc656g00005 Stsc-Chr656 28376 31062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc656g00005 1 438 Aldehyde Dehydrogenase Gene Family AT2G24270 90.868 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc656g00005 K00131 - gmx:100789100 837.795