Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc656g00004 ATGCAGCCTTGTAGCAAGGAAATGCAAAGCCTCAACTCCATGTTCACTACTCAGCATGAGCAGCAGCAGCAGCAGCAGATCCAAATGAACAACAACCACTTGGACCCTACTTGTCAACAAGAAGATGATGATTTCCTCAAGCAAATGCTCTCTAACATCCCTCCACCTCCTCCTCCTTCATGGACCACCCTTGACCACACCTCCTTCAATATCGCTTTCCCTAACTACGACGACCCTGCCACTCTCGCTTCCAAGTTCCGCAACCATCAAATCACCACCGGAAACTCTTCCAAGGCGGCTCATGCTGCTCTCTTGCTCCAACAGCAGCTTCTCATCACTAGAGGACTCGGACTCTCCGCTGCCGACTCCACCATGCTTCACCACATGTTTGATTCCTCTCATCAAAACGACGTCGTTGTCGAAGCCTCTTCCTCTCCCTTCAAATCTCCCAATCCAGTTCAGCCTGGTGACGGTTCAGTTCAGGCTCTGTACGATGGTTTCGCCGGATCTCTCCAGGGTGCTGCTCTCCCCTCCAATCAGACTCAGACTCACCATTTTCAGCATCCACAGGGTCAAGGAGGTTCAAATCCGAATCCGATGCAGGGGCAGGGGCAGGGGCAGGGGCAGAGTGGGAACACGAACTCCGGTCAGCCGAAACAGAGGGTTAGAGCGAGGAGAGGTCAAGCCACTGACCCACACAGCATTGCTGAGAGGTTGAGAAGGGAAAGAATTGCGGAAAGAATGAAAGCTTTGCAGGAATTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCTATGCTGGATGAGATAATCGACTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTTCTTAGCATGAGCAGATTGGGAGGTGCAGCTGCTGTAGCCCCTCTTGTTGCTGATATAAACTCAGAGGGAGGCGGTGACTGCGTCCAAACAAACGGCAACCAAACGGCAGCAGCAGCAGCCGCTTCATCCTCCAACGACAGCCTCACCATGACGGAGCAGCAGGTGGCTAAGCTCATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTCCAAGGGAAAGGCCTCTGCCTCATGCCAATCTCACTAGCCACCGCAATCTCCACTGCCACCGCCACGTGTCACCCTAGGAACCCCATCATCAACCCTGCTGATGGACCCTCCTCTCCCGGCATGTCAGTGCTCACCGTGCAGTCTGCTAACGGTGACGCCGTTAAGGACGCCACCTCCGTTTCCAAGCCCTAA 1251 0.5404 MQPCSKEMQSLNSMFTTQHEQQQQQQIQMNNNHLDPTCQQEDDDFLKQMLSNIPPPPPPSWTTLDHTSFNIAFPNYDDPATLASKFRNHQITTGNSSKAAHAALLLQQQLLITRGLGLSAADSTMLHHMFDSSHQNDVVVEASSSPFKSPNPVQPGDGSVQALYDGFAGSLQGAALPSNQTQTHHFQHPQGQGGSNPNPMQGQGQGQGQSGNTNSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADINSEGGGDCVQTNGNQTAAAAAASSSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATATCHPRNPIINPADGPSSPGMSVLTVQSANGDAVKDATSVSKP 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc656g00004 416 FunFam Transcription factor bHLH66 225 290 - -
Stsc656g00004 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 288 IPR036638 GO:0046983
Stsc656g00004 416 SMART finulus 234 283 IPR011598 GO:0046983
Stsc656g00004 416 MobiDBLite consensus disorder prediction 173 221 - -
Stsc656g00004 416 MobiDBLite consensus disorder prediction 1 26 - -
Stsc656g00004 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 277 IPR011598 GO:0046983
Stsc656g00004 416 MobiDBLite consensus disorder prediction 391 416 - -
Stsc656g00004 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 369 - -
Stsc656g00004 416 MobiDBLite consensus disorder prediction 385 416 - -
Stsc656g00004 416 Pfam Helix-loop-helix DNA-binding domain 233 278 IPR011598 GO:0046983
Stsc656g00004 416 MobiDBLite consensus disorder prediction 141 156 - -
Stsc656g00004 416 Gene3D - 223 285 IPR036638 GO:0046983
Stsc656g00004 416 MobiDBLite consensus disorder prediction 141 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc656g00004 Stsc-Chr656 23801 26963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc656g00004 217 415 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.071 3.52e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc656g00004 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc656g00004 - - cave:132185902 380.563