Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc653g00001 ATGGCTGGAGTGTTTGATAAGTTGAGTGATCTTCATCGTAGGAAGCTTAACTGGCGGTTTAGAGTGTATGTGAAGAGGCTTTATGAACATCGCTTCACTGGCAGTGATTGTTTCACCATTGAGATGGGTGTAAGGGTGCATGCTTCTATCCCCCGTCATTTGGTAAGGAAGTGGCTTGGTATTATAAAGGAGTTTAGGATGTACGAAATGACAAACTTCATTGTCGTCGACAAGAAGCCATTCATAAGGTCAACCACCACGCCATTCACTTTGTTGTTCTCGCATAGGACCAGGGTCCAAGTTGTGGAGGAACCTAGCTTTCCTCTTGATGTGTTCAACTTTAGGCCTTTCAATGAGATTCTAAATGGTGAAAATGCTTGCGACTCCGAGATGTTTGATATAATAGGAGAGGTTGTTGGGAAGGAGGAAGCTAGGGAAGTTGTGACTTCAAAGGGTCTTCTGGTGAAGAGAATGGTGGTTGTGCTAGAAGATTTGGGGAGCAACCGTCTATGCTGTGTTCTGTTTGGCGATTTGATGGATCAAATATTACCCCATCTTAATGAAGAGAGCTTCGATCCTGTTATTGTGGTTATGCAGTATTTCAAAACGTCTCGCTGGAACGAGACGAATTCTATTCAGAGTAACTTTGAGGTTTCTGGAGTGCATGTTAATCCTGAGTTGGCTGTGGTAGATGAGTTTCGAAGTATCCTGCTCAATGGTGAGACCTCGAATGGTATTCGAGTCACTCAGCTTCAGAGCCAGAGCGTTGTGTCTGCTACTCAGGAGCTGAGGAAGGGAAATGTTTTAGAGGCTGAGATTTGGATATTTGGAAAGATTGAGTCTGTTTGTGCCGGGAAGAAAGACTGGTATTATGAGTCATGCATCAAGTGTTATAAGAAGGCTGAGGAGAGCAGCGACGGAAAGTATTTCTGCAAGAAGTGTTCTCTAGAGTATGAGACACCGAAGAAGAGGTATGCGGACATGGATGCAGATGAACACTCCATTGCCTTTGATAAAATGTTGGAGATGAAGTTACTTTTCAAAGTAAATGTGAAGGCCAGCAACATAAAGGAATTTGATACAACATATGCTGTCATGAAGATATGTGACGATGATGAAATGGTTAAGAAGTACCAGCCCATTGATTTTGAGACAAATGCATGTGTTACTCCTAATGATGTTGGTGCAAGTAACTCAGTGGACATGTCAGGGATTACTGTTAATCTTGAAAGTGATGTTGATACTCAGCCTGTTGGGCATTCTCTTGAGAATTCTGTCAACAGTATAAAGTCCAAAGTTCCAGTAAAGAAGTCTAATGACACCCTGAAGTCATGCATTAAGAATTTACAAAAGAAGGAAAGCGGCCAATCATCTACCAATCGGTTTAGCAAGAAGGGACAGAAGAAGGGTGTCAAGAGAGTTAGAATGATCCTTGATGATACTTCAGAATAG 1452 0.4222 MAGVFDKLSDLHRRKLNWRFRVYVKRLYEHRFTGSDCFTIEMGVRVHASIPRHLVRKWLGIIKEFRMYEMTNFIVVDKKPFIRSTTTPFTLLFSHRTRVQVVEEPSFPLDVFNFRPFNEILNGENACDSEMFDIIGEVVGKEEAREVVTSKGLLVKRMVVVLEDLGSNRLCCVLFGDLMDQILPHLNEESFDPVIVVMQYFKTSRWNETNSIQSNFEVSGVHVNPELAVVDEFRSILLNGETSNGIRVTQLQSQSVVSATQELRKGNVLEAEIWIFGKIESVCAGKKDWYYESCIKCYKKAEESSDGKYFCKKCSLEYETPKKRYADMDADEHSIAFDKMLEMKLLFKVNVKASNIKEFDTTYAVMKICDDDEMVKKYQPIDFETNACVTPNDVGASNSVDMSGITVNLESDVDTQPVGHSLENSVNSIKSKVPVKKSNDTLKSCIKNLQKKESGQSSTNRFSKKGQKKGVKRVRMILDDTSE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc653g00001 483 SUPERFAMILY Nucleic acid-binding proteins 274 372 IPR012340 -
Stsc653g00001 483 MobiDBLite consensus disorder prediction 450 483 - -
Stsc653g00001 483 Gene3D - 243 327 IPR012340 -
Stsc653g00001 483 Pfam Domain of unknown function DUF223 41 124 IPR003871 -
Stsc653g00001 483 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Stsc653g00001 483 SUPERFAMILY Nucleic acid-binding proteins 112 237 IPR012340 -
Stsc653g00001 483 Gene3D - 5 101 IPR012340 -
Stsc653g00001 483 Gene3D - 106 242 IPR012340 -
Stsc653g00001 483 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc653g00001 Stsc-Chr653 6382 10414 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc653g00001 103 325 Core DNA Replication Machinery Family AT2G06510 22.134 9.73e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc653g00001 - - aip:107630584 357.451