Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc65375g00001 ATGGAGGGAGAAGATGAAAAGGGTGGTATAACAGTGACATGGCAGAATTTGTGGGTGACTACTCTTTCTGATGCAAAGAGTAGATTGAAACCAATTCTGGAAGGCCTTACAGGTTATGCGCAGCCAGGGAGGCTTTTGGGTATAATGGGACCTTCTGGTTGTGGCAAATCCACACTTCTTGACGCTTTATCAGGAAGATTGAGCCCAAACTTAAAGCAAAAAGGCAAGATTCTAATAAATGGACACACACAAGAACTGGCTTATGGAATATCAGGATATGTAACACAAGATGATGCCTTGCTTTCAACTTTAACTGCTCGGGAGACTTTGTACTACTCAGCTCAGCTCCAATTCCCTGATTCCATGCCCATACCAGAGAAGAAGGAAAGAGCTGATGAGACTCTTCGGGAAATGGGTCTGCAAAATGCCATTAACACAAGGGTTGGAGGATGGGGTTCTAAAGGGCTGAGTGGAGGACAGAAGAGGAGACTCAGCATCTGCATTGAGATCTTAACACACCCTACGCTCTTGTTTCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCTTATTATGTCATGAGAAGAATTGCTAACCTTGTTCACAAAGATGGCATTCAAAGGACTATTGTTGCATCCATTCATCAACCCAGCAGTGAAGTCTTTCAACTCTTCCATGACCTTTGTCTTCTTTCTTCGGGTCAAACTGTTTATTTTGGTCCTGCCTCTGATGCTAATCAGTTTTTTGCTTCAAGTGGTTTTCCTTGTCCAACACTCCATAACCCTTCTGATCATTACTTGAGGATCATTAACAAAGATTTTGAACAGGATGCTGAAGAAGGCTTTGGTAGTGGTGGAATAACGGCAGAGGAATCTACTGATATTCTTGTGAAGTCTTATAGCTTGTCTCAGATTAGAATCAAAGTCAATACAGAAGTGTCAAACATAAATCAAAGTGATTCTGGTGCAGTAGAGAAGAAGAGGGTTCATGCAGCCTTCCTGACTCAGTGCCTTGTCCTTATAAGAAGATCCTCACTCAATTATTTCCGCGACTTGAGCAATTACTGGCTGCGCCTTTTTGTGTTTATGACAATAGCTCTAAGCTTGGGATCTATCTACTATGACATTGGCTTTGGTGTTGGGTCTATTCAGGCCAGAGGATCTCTGATTACTTTCCTGATTTCTCTTTTGTCTTTCATGACACTTGTTGGTGGATTCGCTCCACTGCTAGAGGAAATCAAG 1245 0.4241 MEGEDEKGGITVTWQNLWVTTLSDAKSRLKPILEGLTGYAQPGRLLGIMGPSGCGKSTLLDALSGRLSPNLKQKGKILINGHTQELAYGISGYVTQDDALLSTLTARETLYYSAQLQFPDSMPIPEKKERADETLREMGLQNAINTRVGGWGSKGLSGGQKRRLSICIEILTHPTLLFLDEPTSGLDSAASYYVMRRIANLVHKDGIQRTIVASIHQPSSEVFQLFHDLCLLSSGQTVYFGPASDANQFFASSGFPCPTLHNPSDHYLRIINKDFEQDAEEGFGSGGITAEESTDILVKSYSLSQIRIKVNTEVSNINQSDSGAVEKKRVHAAFLTQCLVLIRRSSLNYFRDLSNYWLRLFVFMTIALSLGSIYYDIGFGVGSIQARGSLITFLISLLSFMTLVGGFAPLLEEIK 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc65375g00001 415 Pfam ABC-2 type transporter 216 277 IPR043926 GO:0140359
Stsc65375g00001 415 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524|GO:0016887
Stsc65375g00001 415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 12 259 IPR003439 GO:0005524
Stsc65375g00001 415 Gene3D - 12 268 IPR027417 -
Stsc65375g00001 415 FunFam ABC transporter G family member 11 10 300 - -
Stsc65375g00001 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 250 IPR027417 -
Stsc65375g00001 415 Pfam ABC transporter 35 184 IPR003439 GO:0005524
Stsc65375g00001 415 CDD ABCG_EPDR 9 241 - -
Stsc65375g00001 415 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 10 415 - -
Stsc65375g00001 415 SMART AAA_5 42 231 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc65375g00001 Stsc-Chr65375 22 1995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc65375g00001 32 244 Calmodulin-binding Proteins AT2G36910 25.571 1.94e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc65375g00001 K05681 - gmx:100790102 620.542