LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc64g00011	ATGGCGGTGGATGTTCATGGTCCTCCTCCTCCTCCGCATCCGATGGAGGGGCTTCACGAGAGTGGTCCTCCACCATTCTTGACGAAGACATACGACATCGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGAGCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCGATTTCACTTCTCCCGAGATTCTTCAAGCACAACAATTTCTCCAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGGTCCTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCAACAACCTACTCTACATCATCAGCAGCAAGGTTTAGACCCTTGTGTTGAGGTTGGAAGGTTTGGATTAGATGGAGAACTGGATCGGTTGCGGCGCGACCGCCAGGTACTAATGGTGGAGTTGGTGAAGCTGAGGCAGCAGCAGCAGACTACAAAGTCTCAGATTCAAGCCATGGAAGCTAAGCTTAGAAGGACTGAGCAGAAACAGCAGCAGATGATGAGCTTCTTGGCAAGGGCAATGCAGAATCCAAACTTTGTTCAGCAATTGGTCCAACAAAAGGAATGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGGCCTATTGGTCAAGGACCTAGTAGCAATAATGTTGAAGTAGATGATGGAATATTAGGTTATGGTGATGATGAAGATTGCTCAACTTTTGTTAAACTAGAGTCACACACTAATTATGATGATGATCATGATGACAGATTTGATTTTGAGGTATCAGACATGGACCTTATTGGTCAAGTTGGAGTAAGTAGAGATAATCATCATAATAATAATATTGATCAAGTGTTTTGGGAAGACTTGTTGAATGAAGGTATTGAAAATCAAGATGTGCTTGCAGCAGCAGCAGTTGAAGATGTAGATGTTTTGGCTGATCAACTTGGTTATTTAGCTTCTACTCCTAATAAATAA	1032	0.4234	MAVDVHGPPPPPHPMEGLHESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTQQPTLHHQQQGLDPCVEVGRFGLDGELDRLRRDRQVLMVELVKLRQQQQTTKSQIQAMEAKLRRTEQKQQQMMSFLARAMQNPNFVQQLVQQKEWRKELEEAFSNKRMRPIGQGPSSNNVEVDDGILGYGDDEDCSTFVKLESHTNYDDDHDDRFDFEVSDMDLIGQVGVSRDNHHNNNIDQVFWEDLLNEGIENQDVLAAAAVEDVDVLADQLGYLASTPNK	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc64g00011	343	Pfam	HSF-type DNA-binding	26	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc64g00011	343	Gene3D	-	18	117	IPR036388	-
	Stsc64g00011	343	Coils	Coil	147	188	-	-
	Stsc64g00011	343	MobiDBLite	consensus disorder prediction	1	22	-	-
	Stsc64g00011	343	PRINTS	Heat shock factor (HSF) domain signature	64	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc64g00011	343	PRINTS	Heat shock factor (HSF) domain signature	77	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc64g00011	343	PRINTS	Heat shock factor (HSF) domain signature	26	49	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc64g00011	343	SUPERFAMILY	"Winged helix" DNA-binding domain	21	115	IPR036390	-
	Stsc64g00011	343	ProSitePatterns	HSF-type DNA-binding domain signature.	65	89	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc64g00011	343	SMART	hsfneu3	22	115	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc64g00011	343	MobiDBLite	consensus disorder prediction	1	19	-	-
	Stsc64g00011	343	FunFam	Heat shock transcription factor 1	19	116	-	-
	Stsc64g00011	343	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	233	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc64g00011	Stsc-Chr64	46224	47941	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc64g00011	12	340	HSF	AT3G22830	56.906	4.61e-130	376

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Stsc64g00011		HSF_DNA-bind	4.4e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc64g00011	K09419		-	gmx:100811941	429.483