Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc64202g00001 ATGGAGGAAAGGAAGTTTGTGTGCAAGTATTGCAGTAAGAGATTCCCTTGTGGCAAGTCTCTCGGGGGACACATAAGGATTCACATGATGAATGAACACTCTCTATCAACAGCAACAATGCCCTATTCTAATACCAATGAGTTTGAATATCCTAACAGAAAGAGGAAGCGTGATTTCATGGCAACAACTAATAATGATTCTGATTTCTGCTATGGTTATGGTTATGGTGGTGGAGTCAAAGAGAATCCGAAGAAAACAAAGAGCTCTAAGTTCTGCAAAGAATGTGGGAAAGGTTTTCCATCGCTCAAGGCTCTTTGTGGCCACATGGCTTGTCACTCAGAGAAAGAAAGAGGAACCAATAACAGGTTTCAGTTGGAATCCAACTCTGGGATCAGTGAGAAGCAGAAACTGGTTCTGGATAGCAATTCTGATACTGAAACCTCTGTTCCAGTTAGGAGATCCAAGAGGATGAGATACAAGAATTTTTCCAGCAACAACTCCAACCCTTTTTATTGTTCTTCCTCTTCCTCTGTGTCTGAGATTGAGCAGGAGCAACAAGAGGTTGCTAGGTGTTTGATGATGCTGTCCAAGGATACCTCCTACAAGGGTCAATTCATGCTTTTCGCCAATAACAATTCGGCTGTTCTTGAGGCGAAATTGCCTTTTGTTGATGAGAAGAAGAAAATTGGTTATGATTCGGACAATTCGGATTCAGGGTATTTCAGATATGGTCCCAAGAAGAAGGTAGATTCTGATTATTATGATGATGATGATGAAGTTAATGACAATGGCGATTCGAGGAGGAACAAGAATTGGAAGCTTGAGTCTTTGACAAGTGAAGATTGCTCTGCATTGGAAAGCCATGAGTTTAATAATAACATCACAGACACTGATTCAAAATCTCACAGTAACAAGAAGATCAATGTGAACAACAAGGGTAAGAGTAAGAGTAAGAAGAAGAAGAAGAAGAAGGTGTTGAAGTCAAAGAAGAACAAGGAACATGAGTGTCCAATTTGCAACAGAGTGTTTAGGTCAGGACAAGCATTGGGGGGTCACAAAAGATCACATTTTATTGGAGGATCTGAAGAGAACACACTTTTCATCAGACCAGATGCTACTACTACTGTTGTTCCATGCCTAATTGATCTCAATCTACCTGCACCTGTTGAAGATGCACCTTTTTGA 1185 0.4059 MEERKFVCKYCSKRFPCGKSLGGHIRIHMMNEHSLSTATMPYSNTNEFEYPNRKRKRDFMATTNNDSDFCYGYGYGGGVKENPKKTKSSKFCKECGKGFPSLKALCGHMACHSEKERGTNNRFQLESNSGISEKQKLVLDSNSDTETSVPVRRSKRMRYKNFSSNNSNPFYCSSSSSVSEIEQEQQEVARCLMMLSKDTSYKGQFMLFANNNSAVLEAKLPFVDEKKKIGYDSDNSDSGYFRYGPKKKVDSDYYDDDDEVNDNGDSRRNKNWKLESLTSEDCSALESHEFNNNITDTDSKSHSNKKINVNNKGKSKSKKKKKKKVLKSKKNKEHECPICNRVFRSGQALGGHKRSHFIGGSEENTLFIRPDATTTVVPCLIDLNLPAPVEDAPF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc64202g00001 394 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Stsc64202g00001 394 SMART c2h2final6 6 28 IPR013087 -
Stsc64202g00001 394 SMART c2h2final6 90 112 IPR013087 -
Stsc64202g00001 394 SMART c2h2final6 334 356 IPR013087 -
Stsc64202g00001 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 334 356 IPR013087 -
Stsc64202g00001 394 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 391 - -
Stsc64202g00001 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Stsc64202g00001 394 MobiDBLite consensus disorder prediction 292 332 - -
Stsc64202g00001 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Stsc64202g00001 394 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Stsc64202g00001 394 ProSitePatterns Zinc finger C2H2 type domain signature. 336 356 IPR013087 -
Stsc64202g00001 394 Pfam C2H2-type zinc finger 334 356 - -
Stsc64202g00001 394 Pfam C2H2-type zinc finger 92 114 - -
Stsc64202g00001 394 Pfam C2H2-type zinc finger 6 28 - -
Stsc64202g00001 394 MobiDBLite consensus disorder prediction 307 329 - -
Stsc64202g00001 394 SUPERFAMILY beta-beta-alpha zinc fingers 91 356 IPR036236 -
Stsc64202g00001 394 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc64202g00001 Stsc-Chr64202 1217 2448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc64202g00001 3 391 C2H2 Transcription Factor Family AT1G26610 37.827 4.50e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc64202g00001 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc64202g00001 - - adu:107489539 493.041