Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc63767g00001 ATGGAAATTCATTTCCAGCAACCAAATCTTCAACACAATAATAACAATAGTAGTAAGAATAATATTGGGATCAACAAAGGAAACAAATTCAAAGGAAGAAGCAAAAACAACAACAATACAAACAAATTCGTTGGAGTGAGGCAGAGGCCTTCCGGGAGATGGGTAGCCGAGATCAAGGACACCACACAAAAGATAAGGATGTGGCTTGGGACATTCGAGACGGCCGAGGAGGCAGCCAGAGCCTACGACGAGGCTGCCTGCCTCCTCCGCGGATCCAACACTCGAACCAACTTCATCACTCAAGTCTCCGCTGATTCTCCCCTCGCCTCGCGAATCCGGAACCTTCTCAACGACAGAAAAGCCATGAAACAACAAGAAACCGGTGTTTCTTGCACCTCAAGAAACCTCAGCACGAGTAGTAGCATCATCAGTTCAAATGCTACTAGTCCAGCAAAATATGAAGAAATTGAGGACTCTGTTCCAAAAAAGATTCAAGTTCGTGATGATTATGTTTATAAACCGGATTTGAGCAACTGCGATTTATTGAATCCGCAATGTAATAGTTTTTGGTGGGGTGGTCTAGGACCGATCTTCGACCGGCTTCCGTTTGCTCAGCTATTGGATGCGCCGAAGATCGAGGATGGCGGGTTTACCGCCTGCGGCCCAACTGAAATGGAGCTTCTAGAATTTGAAAGAATGAAAGTAGAGAGACAAATTTCAGCTTCACTTTATGCAATTAATGGAGTTCAGGAGTACATGGAAACTGTTCAAGAATCTAATGAAGCTCTTTGGGATCTTCCACCTTTGTGCTCATTATTCTGCTAA 825 0.4436 MEIHFQQPNLQHNNNNSSKNNIGINKGNKFKGRSKNNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITQVSADSPLASRIRNLLNDRKAMKQQETGVSCTSRNLSTSSSIISSNATSPAKYEEIEDSVPKKIQVRDDYVYKPDLSNCDLLNPQCNSFWWGGLGPIFDRLPFAQLLDAPKIEDGGFTACGPTEMELLEFERMKVERQISASLYAINGVQEYMETVQESNEALWDLPPLCSLFC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc63767g00001 274 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Stsc63767g00001 274 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Stsc63767g00001 274 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Stsc63767g00001 274 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Stsc63767g00001 274 MobiDBLite consensus disorder prediction 1 48 - -
Stsc63767g00001 274 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Stsc63767g00001 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 239 - -
Stsc63767g00001 274 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Stsc63767g00001 274 MobiDBLite consensus disorder prediction 1 46 - -
Stsc63767g00001 274 Gene3D AP2/ERF domain 41 101 IPR036955 GO:0003700|GO:0006355
Stsc63767g00001 274 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Stsc63767g00001 274 CDD AP2 42 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc63767g00001 Stsc-Chr63767 1904 3003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc63767g00001 29 274 AP2-EREBP Transcription Factor Family AT5G19790 44.141 3.10e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc63767g00001 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc63767g00001 K09286 - gmx:100796898 311.997