Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc635g00003 ATGTCTGAATCTACTCAAGGGGATTACTGTGGATTGTCTTGCCATATCGAGTGTGCCCTTCAACATGAAAAAGTAGGAGTTGTTGATCACGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCATGTGGCAAAGTTACTGGGATACTTGGATGCTGGAAAAAACAGCTAACTATTGCAAAAGATGCTAGGCGTGTAGATGCACTCTGCTACAGGATATATTTGAGTTACAGGCTCTTGGATGGGACTTTGAAATTTAAAGAATTGCATGAACTTGTACAAGAGGCGAAGGCTAAACTGGAGACAGAGGTTGGTCCACTTAATGGGGGTTCTGCGAAGATGGCACGAGGCATTGTCAGCAGACTCCCTATAGCTGGTGATGTGCAGAAACTCTGCACTCTTGCTATTGAGAAAGCTGACAGCTGGCTGGCTAGTGTTCCAAATGTGAATCCTGATTCCAGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCTGTTAAAATCATTTTACTTGAAGTATCAAATGTGGTGGCTGAGGACAGTAAGGGATACAAGCTTTGGTATTACAAGAGTAGGGAAGAATCACACACCAAAGACCCTGTTTCTGTGATTCCTAGATCACAGAGGAGAGTTTTGATATCTAACCTTCAGCCTTGTACAGAATATACTTTTCGCATTGTATCGTATACTGATACAGGAGACCTGGGTCATTCTGAGGCTAAGTGTTTCACAAAGAGCATCGAGGTAATTCACAACGTTCCTCCATCTGTTGCTATGGTACGTAAGAGAGAGAATCTTCAAATTGGGGCTAGTACGTCTGGCTCGAAGATTGAGCCCAATCGCACTATGAAAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAATATTGCATCTTGCTTGGGCTCAGGAACAAGGTTATCTTGAAGATTTTTGCTGTGCTGATATGAAAACATGCTGTGGACAAAGTGAAATGGTCAAGCCTAAAATTCCAGAAGAGCAGCTACCTTCAGTTTCACGAGGCCTTGACTTAAATGTTGTTTCAGTTCCGGATTTAAATGAAGAACTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAACGGTTGCACTTTGATGCAGGCTGTTGAGGCAGATGATGATGCTGCCTCTCATGATCTAGAGAAGAATGGTATAGCAAGATCCCATGGGAGTGGTGATTCCCAAACCTGGATCCATCGGCCAACGGGGGAAGTGCCAGCCGTTGATTCTCTCATAGATGTGGCTAGAAAAAGGATAGCAAGCACAAATGAAGAGATACATGATTGTGACAGCACCTTGATAAATGGTTCTCCCGTACGCATAACTGATGGTTCATCTTCCCTGGATGAGAACTTTGAGTATTGCGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCATATTAAACAGGAATTTAGGCTGAAATTGCTAACATGGTTTAGTCTGAGGTCAACAGAGCAAGAACGCAGGGTGGCATTTTTTCCGTCAATCATATTCGAAGTGATTCATTCTTATTGTAGGCAAGTTCTGTCTTGCTTTAAAGGATTTGCATTGATGATGGTGGAATCAGTAATTCTTTTTTCCCGCGGTCGGGAGGATCTTTAG 1656 0.4306 MSESTQGDYCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLTIAKDARRVDALCYRIYLSYRLLDGTLKFKELHELVQEAKAKLETEVGPLNGGSAKMARGIVSRLPIAGDVQKLCTLAIEKADSWLASVPNVNPDSREGSLPAACKFVFEEVTASSVKIILLEVSNVVAEDSKGYKLWYYKSREESHTKDPVSVIPRSQRRVLISNLQPCTEYTFRIVSYTDTGDLGHSEAKCFTKSIEVIHNVPPSVAMVRKRENLQIGASTSGSKIEPNRTMKDSGFKVRDLGKILHLAWAQEQGYLEDFCCADMKTCCGQSEMVKPKIPEEQLPSVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLMQAVEADDDAASHDLEKNGIARSHGSGDSQTWIHRPTGEVPAVDSLIDVARKRIASTNEEIHDCDSTLINGSPVRITDGSSSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVAFFPSIIFEVIHSYCRQVLSCFKGFALMMVESVILFSRGREDL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc635g00003 551 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 527 IPR044514 GO:0010048|GO:0040029
Stsc635g00003 551 Pfam PHD - plant homeodomain finger protein 4 79 IPR032881 -
Stsc635g00003 551 Gene3D Immunoglobulins 147 250 IPR013783 -
Stsc635g00003 551 Pfam Fibronectin type III domain 166 246 IPR003961 GO:0005515
Stsc635g00003 551 CDD FN3 165 244 IPR003961 GO:0005515
Stsc635g00003 551 ProSiteProfiles Fibronectin type-III domain profile. 160 259 IPR003961 GO:0005515
Stsc635g00003 551 SUPERFAMILY Fibronectin type III 168 250 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc635g00003 Stsc-Chr635 22849 25301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc635g00003 8 508 PHD Gene Family AT3G24440 47.173 2.90e-139 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc635g00003 - - gmx:100780157 867.84