Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc633g00005 ATGGCATCATCATCAGACTCATGGATGAAGGAATATAATGAAGCAGTGAAACTTGCCGATGATATCAATGGCATGATTTCTGAACGGAGTTCATTACCAGCATCTGGACCAGAAACTCAGCGTCATGCATCTGCTATAAGAAGGAAGATTACTATTTTAGGGACCAGACTTGATAGCCTGCAATCCCTTTTATCTAAAGTACCCGGAAAATCTGAGAAGGAGATGAATCGCCGCAAGGAAACGCTTAACAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACACTCAACATGTCAAACTTTGCAAACAGGGATAGTTTATTTGGTCCAGAAATAAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGATAACAGTGGACTTGTTGGACTTCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAAAAATTGGAGGAGACAGTAGTAAGTACAAAGCACATTGCATTAGCAGTGAATGAAGAGCTGGGTCTACACACTAGACTAATTGATGACTTGGACCAACACGTAGATGTTACAGATTCTCGGCTGAGGCGAGTCCAGAAGAACTTGGCAGCTTTAAACAAACGTACCAAGGGTGGATGCTCCTGCATGTGCATGCTTTTTGCGGTGGTTGGTATAGTGGTTTTGGTGGTTGTGATATGGTTGTTGGTCAAATATTTGTAG 690 0.4217 MASSSDSWMKEYNEAVKLADDINGMISERSSLPASGPETQRHASAIRRKITILGTRLDSLQSLLSKVPGKSEKEMNRRKETLNNLRSKVNQMASTLNMSNFANRDSLFGPEIKPDAMSRTVGLDNSGLVGLQRQIMREQDEGLEKLEETVVSTKHIALAVNEELGLHTRLIDDLDQHVDVTDSRLRRVQKNLAALNKRTKGGCSCMCMLFAVVGIVVLVVVIWLLVKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc633g00005 229 SMART tSNARE_6 128 195 IPR000727 -
Stsc633g00005 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Stsc633g00005 229 Coils Coil 178 198 - -
Stsc633g00005 229 FunFam syntaxin-51 isoform X2 135 197 - -
Stsc633g00005 229 Pfam SNARE domain 170 221 IPR000727 -
Stsc633g00005 229 CDD SNARE_Qc 136 193 - -
Stsc633g00005 229 SUPERFAMILY SNARE fusion complex 124 193 - -
Stsc633g00005 229 PANTHER SYNTAXIN 38 216 IPR045242 -
Stsc633g00005 229 Gene3D - 135 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc633g00005 Stsc-Chr633 14579 18468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc633g00005 1 229 SNARE and Associated Proteins AT1G16240 73.276 4.06e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc633g00005 K08503 - gmx:100794038 383.645