Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc63251g00002 ATGGGGTCCAATCAAATATCTGGAAGGATACCTGATGGAGTTGGAAATCTAATCAGCCTAGAAGCACTTGGTATGGAGCGAAATTCCATTGAGGGAACAATTCCATACTCAATTGGAAAGGTTAAGAATCTGGTAGAGTTGGAGCTGGGGGGTAATAAGTTGTTTGGCAACATTTCGCTTGTCATTGGCAACCTTACTATGTTGTCTTTACATGATCTGAGCTCAAATAAATTTGAAGGATTGATTCCTTTTACACTTGCAAATTGCACCAAGATGGAGAGATTTTATGCTGACAGTAACAACTTAAGTGGTAATATACCAAATCAATTATTTGGTTACCAACAAGGTTTAATAGAATTGACCCTATACTCCAACTCCTTTACTGGTCCCATTCCTTTTGATTTTGGTAAATTGAACCATCTTTCCATCTTGCATTTACAAGATAACAAGTTGATTGGTGAGATTCCCATGGAACTTAGTGCTTGTTCTGCTCTAACAGAGCTCAAACTAGAAGGAAACTTGTTCAATGGAATTATACCTTCATTCTTGGGATCTCTACTATCCCTTGATATCTTAGACCTTTCAAATAACAACTTCTCAAATACAATTCCGCATGAACTCGTGAATCTCACGTTGCTGAGTACTTTGAATTTATCTTTCAACAATCTCTATGGTGAAGTCCCAATAGGAGGGGTATTTAAAAACATCACAGCAATATCACTCACCGGAAACAAACATCTTTGTGGTGGGATTCCTCAATTGAATTTTCCTCCATGTCCTGTGTTGCCCTCACATAAGAAACACAAAAGATCGATTAAGAAGAGAGTCATCCTCAGCATTGCATTTGGAGGGGTTCTAATCACTTTTGTGACTTTAATTAGTATATATCTTCTCAAGAAAAAGGCAAACATGTTATCCACTACTTCTCTAGCTTTACAATATGGCTATGTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACCAATGGATTTTCTTCATCCAATTTACTTGGCACAGGAAACTTTGGTACTGTGTATAGAGGAACCTTTGTCCACTTTGAGAGACCTGTAGCTGTGAAGGTCCTGAATCTTCAAACACATGGGGAATCAAAGAGTTTCGTGGATGAATGCAAAGCTCTAGGAAAAATCAAGCACAGAAACCTTCTCAGCATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGGAATGATTTCAAGGCCGTAGTGTTCGAGTTCATGTCTAATGGGAGTCTAGAAACCTTGTCACAATTCCAAGTCTCAGCCTTATTCAAAGA 1295 0.3838 MGSNQISGRIPDGVGNLISLEALGMERNSIEGTIPYSIGKVKNLVELELGGNKLFGNISLVIGNLTMLSLHDLSSNKFEGLIPFTLANCTKMERFYADSNNLSGNIPNQLFGYQQGLIELTLYSNSFTGPIPFDFGKLNHLSILHLQDNKLIGEIPMELSACSALTELKLEGNLFNGIIPSFLGSLLSLDILDLSNNNFSNTIPHELVNLTLLSTLNLSFNNLYGEVPIGGVFKNITAISLTGNKHLCGGIPQLNFPPCPVLPSHKKHKRSIKKRVILSIAFGGVLITFVTLISIYLLKKKANMLSTTSLALQYGYVKVSYGELHQATNGFSSSNLLGTGNFGTVYRGTFVHFERPVAVKVLNLQTHGESKSFVDECKALGKIKHRNLLSILTCCSSVDYKGNDFKAVVFEFMSNGSLETLSQFQVSALFK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc63251g00002 431 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Stsc63251g00002 431 PANTHER OS04G0122200 PROTEIN 5 421 - -
Stsc63251g00002 431 Gene3D Ribonuclease Inhibitor 1 259 IPR032675 -
Stsc63251g00002 431 Pfam Protein tyrosine and serine/threonine kinase 334 420 IPR001245 GO:0004672|GO:0006468
Stsc63251g00002 431 FunFam Leucine-rich repeat receptor protein kinase EMS1 157 254 - -
Stsc63251g00002 431 FunFam Leucine-rich repeat receptor protein kinase EMS1 60 156 - -
Stsc63251g00002 431 Gene3D Phosphorylase Kinase; domain 1 293 412 - -
Stsc63251g00002 431 SUPERFAMILY L domain-like 2 249 - -
Stsc63251g00002 431 ProSiteProfiles Protein kinase domain profile. 331 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc63251g00002 431 FunFam LRR receptor-like serine/threonine-protein kinase EFR 301 412 - -
Stsc63251g00002 431 Pfam Leucine rich repeat 164 223 IPR001611 GO:0005515
Stsc63251g00002 431 SUPERFAMILY Protein kinase-like (PK-like) 312 421 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc63251g00002 Stsc-Chr63251 3858 5152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc63251g00002 1 419 Receptor kinase-like Gene Family AT3G47570 45.412 1.39e-110 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc63251g00002 PK_Tyr_Ser-Thr 1.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc63251g00002 - - ahf:112766919 608.986