Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc63139g00001 ATGTTAATCTCTCACCGTTACAAACCCCTTCTCTATCAAACCCTAAATCTTGTATTCCAAAGAACACCACCACTCATGTTCTGCACTTCACAGTCACACTCTTCCACTGTTTCATACCTCATCAATAATCTTGGTTTCACCCCACAAGCTGCTCTAACTCTAACAACCGCAAAAGAGTTTCGTTTCAGTACCCCACAAAAGGCAGACGCAGTCCTCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATTGCTACCATTGTTACCAAGCTACCTGCAATACTTTCATCCAATCCACAAACGATCCTGCCAAAGTTTCAATTTTTAGCCTCCAAAGGTGCTTCCACCCATGACATTGTTCTAGTAACAACTGGGTACCCTAGATTCTTGAATTTGAGCCTCCAGAACCACATAATCCCTACTTATGGATTCCTGAAAACCTTCTTTCGATCCGATGAGAAAACGCTCAGCTCCATTGTTTCTAGCCCTGGTTCCTTCATGAATTCTCGCTTGCCGAGAAATACCAAGTTGTTGGCTGATGCCGGAGTCTCTAACTCCGCTCTGGGCCGTATGATTCTTGCCCGAGCATCTGTGCTCACGGCTTCTGACTTGAGCAAGTATGTGGATGAAGTAAAGAAATTAGGGATTGATCCTTCAAAGGTTAAGTTTGCTTTAGCCTTGATAGCCAAAAAGACTGTACAGGTATCGCTTTGGGATGCCAAAGTTGATGTCTTGAAGAGCTGGGGTTGGTCTGAAGAAGTAATGTCCAAAGCATTCAGGACAAACCCTTCATATATGCTAACCTCTAAGGATAAGATTAATGAGGTGATGAAGCTTTGGGTCAATCAATTAGGTTGGGACCCTTTGGCCCTTGCCAAGATTCCATTTCTTTTTGGATATAGTTTGGAGAGAAGAATCATTCCGAGGGCTTTTGTTCTCCAGTATTTACTTGCAAAAGGTTTGAGAAACAAGAATAGTGATTTGTCTAAGCCGTTTTTTATTTCGGAAGAGGAGTTCATTAAAAAGTTTGTGGAATGTTTTACCGAGGAAAGGTCTCAACTGCTGAAGATATACTATGAGAAAAAAGGATCTTCATGTTAA 1104 0.4212 MLISHRYKPLLYQTLNLVFQRTPPLMFCTSQSHSSTVSYLINNLGFTPQAALTLTTAKEFRFSTPQKADAVLAFFKTHGFSHSQIATIVTKLPAILSSNPQTILPKFQFLASKGASTHDIVLVTTGYPRFLNLSLQNHIIPTYGFLKTFFRSDEKTLSSIVSSPGSFMNSRLPRNTKLLADAGVSNSALGRMILARASVLTASDLSKYVDEVKKLGIDPSKVKFALALIAKKTVQVSLWDAKVDVLKSWGWSEEVMSKAFRTNPSYMLTSKDKINEVMKLWVNQLGWDPLALAKIPFLFGYSLERRIIPRAFVLQYLLAKGLRNKNSDLSKPFFISEEEFIKKFVECFTEERSQLLKIYYEKKGSSC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc63139g00001 367 Gene3D Transcription termination factor 3, mitochondrial 167 358 IPR038538 -
Stsc63139g00001 367 SMART mt_12 16 47 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 SMART mt_12 86 116 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 SMART mt_12 121 152 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 SMART mt_12 190 218 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 PANTHER CGI-12 PROTEIN-RELATED 32 348 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 FunFam Mitochondrial transcription termination factor-like 135 352 - -
Stsc63139g00001 367 Pfam mTERF 72 277 IPR003690 GO:0003690|GO:0006355
Stsc63139g00001 367 Pfam mTERF 241 340 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc63139g00001 Stsc-Chr63139 670 2317 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc63139g00001 mTERF 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc63139g00001 K15031 - gmx:102666739 326.25