Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62g00008 ATGACGATCAACAACAATAACAACCCTCCAAAGCTAATAGCAATGGATGATGCGGAGGTCAATTCAAGAGGATATAGTCTCAGCGGCAAGATCATGCTAACCGCCATTATCGTCCTCTTCTTCCTCGTCCTCCTCATGCTCTCTCTCCACCTTTACGCTCGCTGGTACCTCACCCGCGCCCGCCGCCGCCACAATCTCCGCCGCAACCTTCGCCGCCGCCGTACCAACATCGTCTTTTACATCGACCCTCCCACGCTCTCCGCTTCCCAAGGCCTCGACCCCGCCCTCCTTGCCTCCATCCCTATCTTCACCTACCAACCCAAGCCGCCCGCCGACCACCCGCCGGAATGCGCCGTGTGCTTGTCGGAGTTCGAGCCGGGAGAAACTGGCCGGATCTTGCCCAAATGCAACCACGTGTTTCACACCGACTGCATAGATATGTGGTTCCATTCTCATGCCACGTGTCCGCTCTGCAGAGCTCCTGTGGAGCCCCAACCCGAATTGGAAACCCGACCCGAAGAGTTTGTTATGACGGTTTGCGAAGACGAAACCGGTTCCGGTTCGAGCTCGGGGATCTGCCCGCAAGAACTGAACCGGAGTGGAACTGGAAACGGAAGGGAGAGGAGGAAGCTTTCGCCGGTGACGGTGGATGTTCCGGCGAGGAATTGCGAGAGTTTTCGCGACGAGTCCGGGGGTCACGAGTCGCCGCCGTCGTCGTCCTCATCGTTTCGGTCTCCGATGAGTCGAATGCTTTCGTTCAAGAGAATCCTCAGCAGAGAACGGAAAGGGAGCGTGTCTCCGTCTTCCGTGGCCACGTGTGGCGGTGGTGGTTGTAGCTCCGCCGGTGAGGGGGGCGACGGAGAGCGAGGTTGTGAGAAAGAGGAGAGTCTGAAATTGGCGAGTTCGTGA 909 0.582 MTINNNNNPPKLIAMDDAEVNSRGYSLSGKIMLTAIIVLFFLVLLMLSLHLYARWYLTRARRRHNLRRNLRRRRTNIVFYIDPPTLSASQGLDPALLASIPIFTYQPKPPADHPPECAVCLSEFEPGETGRILPKCNHVFHTDCIDMWFHSHATCPLCRAPVEPQPELETRPEEFVMTVCEDETGSGSSSGICPQELNRSGTGNGRERRKLSPVTVDVPARNCESFRDESGGHESPPSSSSSFRSPMSRMLSFKRILSRERKGSVSPSSVATCGGGGCSSAGEGGDGERGCEKEESLKLASS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62g00008 302 SUPERFAMILY RING/U-box 111 167 - -
Stsc62g00008 302 CDD RING-H2_EL5-like 116 159 - -
Stsc62g00008 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 166 IPR013083 -
Stsc62g00008 302 MobiDBLite consensus disorder prediction 232 248 - -
Stsc62g00008 302 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Stsc62g00008 302 MobiDBLite consensus disorder prediction 182 201 - -
Stsc62g00008 302 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 176 IPR044675 -
Stsc62g00008 302 SMART ring_2 117 158 IPR001841 -
Stsc62g00008 302 MobiDBLite consensus disorder prediction 182 302 - -
Stsc62g00008 302 Pfam Ring finger domain 116 159 IPR001841 -
Stsc62g00008 302 FunFam E3 ubiquitin-protein ligase ATL6 83 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62g00008 Stsc-Chr62 66260 67168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62g00008 4 293 Rapid Response to Elicitors AT3G16720 46.535 1.54e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62g00008 - - gmx:100791545 254.988