Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62g00006 ATGGCGGAAGGTAGCGGAGACAACAGGAAGAGACTTCTCATTATTAGCATCTCCATGGTCCTTCTCGTGGGCGTGATCGGGTCGGTGGCGATCGGCGTAAGCAGCCACCCAACCGGCGGGGACAAAGGGTCGAAAGCCGAGGACGGCGTCGACCACAACGAAGAAGACACCCACTTGGCAAAATCCCAAAAGAACGTAGAAGTGATCTGCGGATCCACAGAATACAAAGACACATGCAAAGACAGCCTTGCAGATGCTTCAAACAAAACCTCAGACATGAAAGAACTCATCAAAGCTGCATTCAACTACACAACGATTGAGTTAACGAGTCACATTCAAAATTCATCTCTTTACAATGAGTTGGGGAAGGACAACATGACGAGACAAGCTTTGGACATATGCAAAGAAGTTCTTGGTTATGCAGTTGATGATCTTCACAAATCTATTGAAAAGATTGACAAATTTGAGCTGAGCAAGATCAATGAATATGCTTATGATATCAAGGTTTGGGTTGCTGCCACCATAACCCACCAACAGACATGCTTGACCGGGTTCGAGAACACGACGACCGAAGCCGGTTCGACCATGGAAAACGTGCTCAAGACTTCTCTAGAGCTTAGTAGCAACGCGCTGGACATGATCAATGGCGTGAGCAAGGTGCTCGGTCAATTCGACTTTAGCGCGCTAGCAGGCAGTGGAGGCAGCGGCGGCAATAGTCAAAGGAGGCTTCTGGAAGAAGACTCGTCGAATTTATTAAAGGAGGATGGAAATGGAATTCCTTCGTGGGTGAATGAAGGGCAAAGGAAGCTAATTGAGGCCGGTCCGGCCGGCGGAGTCGGAAGCATTGTGCCTAATGCAGTGGTGGCTCTAGATGGGAGTGGACAGTTTAAGACATTGACTGATGCTCTTAAAATGGTGCCAAAGAAGAACAAGACTCCATTCGTAATTTATGTTAAGGCTGGTGTGTACAAGGAATATGTGAATGTGATAAAGAACATGGATCATGTGACTGTTGTTGGGGATGGTCCTGACAAGACTATATTCACTGGTAGCAAGAATTATGTTGATGGTGTCCAAACTTATAACACTGCAACTTTCGGTGTGAATGCTGCAAACTTCATGGCGAAGAACATTGGATTCGAGAACACAGCAGGCCCAGAAAAGCACCAAGCAGTGGCACTCAGAATCACAGCAGACCAAGCCGTGGTCTACAACTGCCACATGGAAGGTTTCCAAGACACCCTCTACGTCCAATCCCAACGCCAATTCTTCCGTGACTGCACCATCACCGGCACCATAGACTTCGTCTTCGGCGACGCCGTCGGAGTCTTCCAAAACTGCAAGCTCCTCGTCAAGAAGCCCATGTCTAACCAACAATGCATGGTCACAGCCGGCGGAAGAATCAAAGTTGACAGCCCAACTGCCCTTGTTTTCCAGAGCTGCTACTTCACTGGGGAGCCTCAACTTAAAAGCTTGAACCCCAAGATTTCTTACTTGGGTCGCCCATGGAGGACTTACTCCAAGGTGGTTATCATGGACTCCATCATTGATGATATCTTTGTGCCTGAAGGGTACATGCCATGGATGGGAAGCGCTTACAAGGACACGTGTACTTATTATGAGTATAACAATAAGGGACCTGGTGCTGATACTTCTAAGAGGGTTAAGTGGCCTGGGTTTAAGGTCTTGGATGCTCCTGAAGCTGCTAACTATTATCCTGGCAAATTCTATGAGCTATCTAACTCTACTGATCGTGATGCTTGGATCATTGACTCTGGTGTACCTTACAATCTTGAAGCCTTCCCTGCCTCCACTTCCGCCGGCGTCACGCCTTTAACTATTAATGTCGCTCCTGCTGTTGCTGCGGCCACTCCTGCTGTTTCCGCAGCCACAAAGAAGACAGCGAGTTTGCCACCGCCACCAGAAGCATTTATCAGCATCCTGATTAAAGAAAGTGATGAACTGAAACCGGATTCTGAAGAACCGTTTATGAACCGGAGAACCGGCCGGAAACCGGTTGGTCGAACCGGACCGGGGATCTGGCCGCCATCGTTCGCCGTCACTGGTTTCGCCGGTCTCCGTTCAACCACCGTCTTCGTCGTCACTTTGTCACCGTATGTTTCCTCATTGGTCGGTGACAAAGTGATGGGATAA 2154 0.4861 MAEGSGDNRKRLLIISISMVLLVGVIGSVAIGVSSHPTGGDKGSKAEDGVDHNEEDTHLAKSQKNVEVICGSTEYKDTCKDSLADASNKTSDMKELIKAAFNYTTIELTSHIQNSSLYNELGKDNMTRQALDICKEVLGYAVDDLHKSIEKIDKFELSKINEYAYDIKVWVAATITHQQTCLTGFENTTTEAGSTMENVLKTSLELSSNALDMINGVSKVLGQFDFSALAGSGGSGGNSQRRLLEEDSSNLLKEDGNGIPSWVNEGQRKLIEAGPAGGVGSIVPNAVVALDGSGQFKTLTDALKMVPKKNKTPFVIYVKAGVYKEYVNVIKNMDHVTVVGDGPDKTIFTGSKNYVDGVQTYNTATFGVNAANFMAKNIGFENTAGPEKHQAVALRITADQAVVYNCHMEGFQDTLYVQSQRQFFRDCTITGTIDFVFGDAVGVFQNCKLLVKKPMSNQQCMVTAGGRIKVDSPTALVFQSCYFTGEPQLKSLNPKISYLGRPWRTYSKVVIMDSIIDDIFVPEGYMPWMGSAYKDTCTYYEYNNKGPGADTSKRVKWPGFKVLDAPEAANYYPGKFYELSNSTDRDAWIIDSGVPYNLEAFPASTSAGVTPLTINVAPAVAAATPAVSAATKKTASLPPPPEAFISILIKESDELKPDSEEPFMNRRTGRKPVGRTGPGIWPPSFAVTGFAGLRSTTVFVVTLSPYVSSLVGDKVMG 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62g00006 717 MobiDBLite consensus disorder prediction 656 677 - -
Stsc62g00006 717 ProSitePatterns Pectinesterase signature 1. 310 329 IPR018040 -
Stsc62g00006 717 Pfam Plant invertase/pectin methylesterase inhibitor 66 213 IPR006501 GO:0004857
Stsc62g00006 717 PANTHER PECTINESTERASE 15 589 - -
Stsc62g00006 717 FunFam Pectinesterase 4 282 600 - -
Stsc62g00006 717 SUPERFAMILY Pectin lyase-like 285 578 IPR011050 -
Stsc62g00006 717 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 218 IPR035513 -
Stsc62g00006 717 Gene3D - 282 601 IPR012334 -
Stsc62g00006 717 MobiDBLite consensus disorder prediction 36 61 - -
Stsc62g00006 717 SMART PMEI_2 61 213 IPR006501 GO:0004857
Stsc62g00006 717 CDD PMEI-like_3 69 219 - -
Stsc62g00006 717 NCBIfam pectinesterase inhibitor domain 60 216 IPR006501 GO:0004857
Stsc62g00006 717 MobiDBLite consensus disorder prediction 41 61 - -
Stsc62g00006 717 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 215 IPR035513 -
Stsc62g00006 717 FunFam Pectinesterase 62 218 - -
Stsc62g00006 717 Pfam Pectinesterase 285 576 IPR000070 GO:0030599|GO:0042545
Stsc62g00006 717 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62g00006 Stsc-Chr62 54052 57735 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62g00006 8 647 Carbohydrate Esterase AT3G05610 42.835 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62g00006 K01051 - gmx:100800194 750.74