Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62g00003 ATGTGTCACAATACAGAAGAGGAGTACCAAAATTTCTGCCATGAGGTTGTAAGAAAAGTTGACGATTCATCTTCCAACGACCCCAAAGCGTACATCAACACCGCCGTGGACGAAATCAGAGACAGCATCAACAATGCCATAAACATGATGATGTCAGGGGAGTTCTCCAAACAAAATGACAAAGGAATTAACATGGCAATTGATGGTTGCAAAGAAGTCATGGAATCTGCATTGCGCAGCATCGATCTTGTCTCTGATGTTCTTGACAGCAATAACGACATTAACTATGTCCAAAATCAAAGCCCTGACCTCAAGAATTGGCTTAGCTCTGTTATCTCATATCAGCAATCTTGTGTCGACATTTTCGAGGACGGTAACGAAGGAGAGCTTAAAATCAAAGAAGAACTGCAAAAGCAGAGTTTGGATCGCATTGAGAAGCTTTCTGTGATAACTCTCGATATTGTTACTGGTTTGGCTAAGATTGTTCAAGATCTCGGTTTGAATATCGAAACGAAACCAAGTTCTTTTGATTCTGGCCGAGTTCTTAGCGAAGAAGAGGGTGATGATGATAACGAGGGGTTCCCCGATTGGATTTCGCCTCCGGATCGCATGTTGTTGGCAAAAGATGTAAAGTTTCATGTTCCGAATGTAGTGGTTGCTAAAGATGGTAGTGGGAACTTTAAGACAGTTCAAGGTGCAATTAACTCATACCCAAAGGGAAAGAATTTTCAGGGAGGAAGGTTCATTATCTATGTTAAGGGTGGGATCTACAAGGAGAATTGTACGGTTCCATCTTACGCAATGAACATTTTCATGTATGGTGATGGCCCAACTAAGACCATTATCACTGCTAGCATGGACAATGCTACTATGGGTTTGAAGACAATGCATACTGCGACTTTCGTCAATAAGGCGGGAATGTTTCTTGCAAAGGACATGAGGTTTGAGAACGCAGCTGGGCCAGAAGGGCACCAAGCAGTTGCACTGAGAAACGTAGGAGATTTTTCAGCCTTCTTCAACTGCCACATCCATGGCTATCAAGACACTTTATATGTTCAAGCCAACAGACAATTTTATCGCAACTGCGAAATTGCTGGGACAGTTGACTTTATCTTTGGCACATCCCTCGCCTTGATCCAAAGAAGCAAGCTCATCGTTCGGAAGCCTTTGGATTCTCAATTCAATATATTAACCGCAGATGGCACCGTCTACAAGAACATGACTACTGGCATCGTGATTCAGGGATGCGAAATCGTTCCGGATCCTTTGTTCGATCGTGTGAAGTACCAAGTGAAAACTTATTTAGGTAGACCATGGAAGGAAGGATCAAGAACAATTATCATGGAATCTTATCTTGGTGACTGGATTGATCCAGAAGGGTGGGCCCCTCATCAAGATAATGAGATTAAGGGTAGTGTAGATTATTCTGAGTATGGGAACACTGGACCTGGGGCTTCAATTCAAGGAAGAATTAAGTGGAAGAGTTATCGTGGTATGATCAGCAAGAATGAAGCCAAACGATTCACTCTTGGTGAATTTCTTAAGGGTGGACCTGATAATAGTGCTGAGAAATGGTTGACTGCTCTTGGTGTTCCTTTTGAGAGTGGTTTTTTAAGACCATAA 1623 0.4245 MCHNTEEEYQNFCHEVVRKVDDSSSNDPKAYINTAVDEIRDSINNAINMMMSGEFSKQNDKGINMAIDGCKEVMESALRSIDLVSDVLDSNNDINYVQNQSPDLKNWLSSVISYQQSCVDIFEDGNEGELKIKEELQKQSLDRIEKLSVITLDIVTGLAKIVQDLGLNIETKPSSFDSGRVLSEEEGDDDNEGFPDWISPPDRMLLAKDVKFHVPNVVVAKDGSGNFKTVQGAINSYPKGKNFQGGRFIIYVKGGIYKENCTVPSYAMNIFMYGDGPTKTIITASMDNATMGLKTMHTATFVNKAGMFLAKDMRFENAAGPEGHQAVALRNVGDFSAFFNCHIHGYQDTLYVQANRQFYRNCEIAGTVDFIFGTSLALIQRSKLIVRKPLDSQFNILTADGTVYKNMTTGIVIQGCEIVPDPLFDRVKYQVKTYLGRPWKEGSRTIIMESYLGDWIDPEGWAPHQDNEIKGSVDYSEYGNTGPGASIQGRIKWKSYRGMISKNEAKRFTLGEFLKGGPDNSAEKWLTALGVPFESGFLRP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62g00003 540 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Stsc62g00003 540 NCBIfam pectinesterase inhibitor domain 2 157 IPR006501 GO:0004857
Stsc62g00003 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 159 IPR035513 -
Stsc62g00003 540 Pfam Plant invertase/pectin methylesterase inhibitor 2 154 IPR006501 GO:0004857
Stsc62g00003 540 SMART PMEI_2 1 154 IPR006501 GO:0004857
Stsc62g00003 540 Gene3D - 212 537 IPR012334 -
Stsc62g00003 540 SUPERFAMILY Pectin lyase-like 216 533 IPR011050 -
Stsc62g00003 540 PANTHER PECTINESTERASE 1 527 - -
Stsc62g00003 540 FunFam Pectinesterase 4 213 537 - -
Stsc62g00003 540 Pfam Pectinesterase 216 516 IPR000070 GO:0030599|GO:0042545
Stsc62g00003 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 155 IPR035513 -
Stsc62g00003 540 CDD PMEI-like_3 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62g00003 Stsc-Chr62 25379 27400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62g00003 1 537 Carbohydrate Esterase AT4G33230 36.697 3.30e-114 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62g00003 K01051 - gmx:100815015 559.296