Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc629g00003 ATGGGTTCCCGAAGGGGTGACAACCCTCACACCGGTGACGGTGCCAGTCCTGGGAAAATCTTTATCGGAGGTCTGGCCAAAGACACCACTTTGGATACTTTTGTTGAGTACTTTGAGAAGTACGGAGAGATAATGGACTCGGTTATAATGAAGGATCGGCACACCGGAAAACCGAGGGGTTTTGGTTTCATAACCTACGCAGATCCTTCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTTATCAATGGCAAGCAGGTTGAGATTAAGAGGACTATTCCAAAGGGTTCATCACAAGCTACTGACTTCAAAACAAAGAAGATTTTTGTTGGTGGCATTCCAACATCAGTGACTGAAGATGAGTTTAAGAGCTTCTTCATGAAGTATGGGAAAGTCGTCGAACATGAGATTATACGTGATCACGCTACTAAACGTTCCCGGGGATTCGGCTTTATAGTTTTTGACAGTGAAAAAGTTGTTGATAATATGTTGGCAGATGGGAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACTTCCTTACTATGATGGTTTTGGTGGATTTGGTGATTCTTATGGAAGTTTTGCTAATAGCAGTTTTGGTCCTGCTTCGTATAGATCATTTGGAGGTTTCGGTGGTAGGCTTAGCAGTTATGGTGGATATGGCAGTGGAGATGATTTTGGTGGTGGTTTTGGAGGTCCCGGTGGTGGTGTTGGTGGTGGCTATGCAGGTTACCGTGGAGAATCATCATTTGGTTACTCTAGTCGCTATGGTTCCTTTATGGGGGGCCTTGGCGGTGGTTATGGTGGAAGTGGCTTAGGTGCTTATGGACGTGGTGGTGGGGGCTATGGAAGTTATGGGGGTGTGGCTGGTGGTGGGGGTTATGAACCAGGACCTGTTATTGGTTATGGTGGGGCTGGAGGAGGACTTTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGCCGCTACCATCCTTATGCAAGATAG 1059 0.4646 MGSRRGDNPHTGDGASPGKIFIGGLAKDTTLDTFVEYFEKYGEIMDSVIMKDRHTGKPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQATDFKTKKIFVGGIPTSVTEDEFKSFFMKYGKVVEHEIIRDHATKRSRGFGFIVFDSEKVVDNMLADGNMIDMSGTQVEIKKAEPKKSSNSASLPPFASDSRALPYYDGFGGFGDSYGSFANSSFGPASYRSFGGFGGRLSSYGGYGSGDDFGGGFGGPGGGVGGGYAGYRGESSFGYSSRYGSFMGGLGGGYGGSGLGAYGRGGGGYGSYGGVAGGGGYEPGPVIGYGGAGGGLYGSRGGYGGSSRYHPYAR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc629g00003 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Stsc629g00003 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Stsc629g00003 352 Gene3D - 18 98 IPR012677 -
Stsc629g00003 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Stsc629g00003 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Stsc629g00003 352 Gene3D - 99 193 IPR012677 -
Stsc629g00003 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 352 - -
Stsc629g00003 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Stsc629g00003 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Stsc629g00003 352 SUPERFAMILY RNA-binding domain, RBD 100 190 IPR035979 GO:0003676
Stsc629g00003 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Stsc629g00003 352 SUPERFAMILY RNA-binding domain, RBD 13 98 IPR035979 GO:0003676
Stsc629g00003 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc629g00003 Stsc-Chr629 17591 20690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc629g00003 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 23.333 1.13e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc629g00003 K12741 - gmx:100801373 452.595