Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62876g00001 ATGAAAATCCCATCAATTTCATCATCATCCTTCTCCTTGATTCTCTTCCTCTTATTCCTCATTGTACCATTGCTACAAGCCCAACAACAAGCTCCACCAACAAACTCTCCTCCTCCTTCTTCGGAACAAAAATATTCGCCTCCTCCATCACCACTACTTCTGGCTCGAAAATATGCTCCTCCTCCTCCACCCACTCCGAGTCCAATCCTTACGCCTCCTTCACCTCCACCACATTCTCCACTTTCTCCTCCTCCTTCTACTCCTTCACCGCCATCATTTCCGGCTCAAAAATATCCTCCACCTCCACCATACCCTTCGTCTTCTCGAAAAGATACTCCTCCTCCTCCTCCACCACCACCATTTCCGGCTCGAAAATATGCTCCTCCTCCCCCACCTTCTTCTCCTCCTTCCAATCCTTCACCACCTTCTCCATTTTCTCCTCCTCCTCCTTCCTCCCCTGAAGCCTGCAAGTCCACTCTATACCCTAAACTCTGCCGCTCCATTCTAAAATCCATTCGCTCCTCGCCGTCCGATCCATACCACTTAGGCAAATTCTCTATCAAACAAAGCCTCAAACAAGCTAAGAAGCTCACCAAAGCCTTCAACGACTTCCTCCAAAAACATAAGTCTTCTTCCTACCTCAACCAAGCCGAGATCTCGGCACTTGATGACTGCGGAGACCTCAACAAACTCAATGTAGACTACCTCCAAACCGTCTCCGACATCCTCAAATCCGCGACCTCATCCAATGACAAAGACAATGATGAATTGGTTGAGGATACTGAGACATATCTGAGTGCCGTGGCCACTAACCACTACACTTGCTACGATGGGTTGGTGGCGGCGAAGAGTAACATCGCGAACGCGCTGGCGGCGCCTCTCAACAATGTGAAGCAACTGTATAGTGTGGCTCTTGGGTTGGTTACGGAGGCTCTGAACAAGAACATGAAGAAGCATAAGACAAGAAAGCATGGTCTCCCTTCTAATAGCTACAAAGTTAGACAGCCTCTTCAGAAGCTCATTAAGTTTCTACAGAAAACGAATAGTGGTTGCAAAGATTCATCATTGAATTGTACAAGGAAAAGCGAAAGGATTCTTGAAGAAAGCAATAATGGGAATGGAATTCTACTGAACAGCTATGTGATAGTGAGCGTTGATGGGACAGAGAACTTCACTTCAATAGGAGACGCCATTGCTATTGCTCCGAACAATTCAAAGCCAGAAGATGGCTATTTCCTTATCTATGTCACACAAGGGATCTACGAGGAGTATGTCGCTATCCCCAAACAAAAGACTAACATTTTGCTTGTTGGAGATGGTATCAATAACACTATCATCACAGGGAATCATAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACTTTTGCTGTTTCCGGAACAAGATTCATGGCAGTGGATATTACATTCAGAAACACAGCTGGCCCTGAAAAGCACCAAGCAGTAGCAGTTAGAAGCAATGCTGATCTCTCCACCTTCTACCGGTGCAGTTTTGAAGGATATCAAGACACGCTCTATGTCCACTCTCTCAGACAATTCTATAGAGAATGTGACATATACGGAACAGTTGACTTTATATTCGGTAACGCCGCCGTAGTTTTCCAGAGCTGCAACATCTACGCAAGAAAGCCAATGGCTAGCCAGAACAATGCCGTCACGGCACAAGGCCGGACGGATCCGAACCAAAACACCGGAATCTCAATCCAAAATTGCACCATCCAGGCCGCCCCCGACTTGGAGGCGGACCTAGAATCCACACAGAATTACCTGGGTAGGCCATGGAAAGAGTACTCAAGGACAGTTTATATGCAGTCGTATATTGGTGACTTGGTTAACCCTTCTGGATGGTTAGAGTGGAATGGGACTGTTGGGTTGGCCACATTGTTCTATGGTGAGTTTAAGAACTATGGTCCTGGAGCTGGTACAAGTAACAGAGTTAAATGGAAAGGGTATAATCTGTTGAATGCTACTCAAGCTTGGAATTTCACTGTTTTGAATTTTACTTTGGGGGATACCTGGCTTCCTGACACGGATATACCATACACTGCAGGCCTAGATGATTAG 2088 0.4607 MKIPSISSSSFSLILFLLFLIVPLLQAQQQAPPTNSPPPSSEQKYSPPPSPLLLARKYAPPPPPTPSPILTPPSPPPHSPLSPPPSTPSPPSFPAQKYPPPPPYPSSSRKDTPPPPPPPPFPARKYAPPPPPSSPPSNPSPPSPFSPPPPSSPEACKSTLYPKLCRSILKSIRSSPSDPYHLGKFSIKQSLKQAKKLTKAFNDFLQKHKSSSYLNQAEISALDDCGDLNKLNVDYLQTVSDILKSATSSNDKDNDELVEDTETYLSAVATNHYTCYDGLVAAKSNIANALAAPLNNVKQLYSVALGLVTEALNKNMKKHKTRKHGLPSNSYKVRQPLQKLIKFLQKTNSGCKDSSLNCTRKSERILEESNNGNGILLNSYVIVSVDGTENFTSIGDAIAIAPNNSKPEDGYFLIYVTQGIYEEYVAIPKQKTNILLVGDGINNTIITGNHSVIDGWTTFNSSTFAVSGTRFMAVDITFRNTAGPEKHQAVAVRSNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPMASQNNAVTAQGRTDPNQNTGISIQNCTIQAAPDLEADLESTQNYLGRPWKEYSRTVYMQSYIGDLVNPSGWLEWNGTVGLATLFYGEFKNYGPGAGTSNRVKWKGYNLLNATQAWNFTVLNFTLGDTWLPDTDIPYTAGLDD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62876g00001 695 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 155 309 IPR035513 -
Stsc62876g00001 695 Gene3D - 378 695 IPR012334 -
Stsc62876g00001 695 Pfam Pectinesterase 381 678 IPR000070 GO:0030599|GO:0042545
Stsc62876g00001 695 MobiDBLite consensus disorder prediction 28 157 - -
Stsc62876g00001 695 FunFam Pectinesterase 376 693 - -
Stsc62876g00001 695 NCBIfam pectinesterase inhibitor domain 154 309 IPR006501 GO:0004857
Stsc62876g00001 695 SUPERFAMILY Pectin lyase-like 378 692 IPR011050 -
Stsc62876g00001 695 MobiDBLite consensus disorder prediction 53 155 - -
Stsc62876g00001 695 Gene3D Invertase/pectin methylesterase inhibitor family protein 153 311 IPR035513 -
Stsc62876g00001 695 PANTHER PECTINESTERASE 154 683 - -
Stsc62876g00001 695 SMART PMEI_2 147 307 IPR006501 GO:0004857
Stsc62876g00001 695 ProSitePatterns Pectinesterase signature 2. 527 536 IPR033131 -
Stsc62876g00001 695 PRINTS Proline rich extensin signature 94 119 - -
Stsc62876g00001 695 PRINTS Proline rich extensin signature 28 49 - -
Stsc62876g00001 695 PRINTS Proline rich extensin signature 49 65 - -
Stsc62876g00001 695 PRINTS Proline rich extensin signature 72 89 - -
Stsc62876g00001 695 CDD PMEI-like_3 155 310 - -
Stsc62876g00001 695 Pfam Plant invertase/pectin methylesterase inhibitor 154 306 IPR006501 GO:0004857
Stsc62876g00001 695 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62876g00001 Stsc-Chr62876 489 6233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62876g00001 155 693 Carbohydrate Esterase AT3G10720 61.142 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62876g00001 K01051 - gmx:100808277 853.588