Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc62860g00001 | ATGGCCAATGCTGGGCCACCTAATTCCAATGGGAGTCAGTTTTTCATAACCCTTGACCGTTGTGACTGGCTTGATCGGAAGCACACTATTTTTGGAAAGGTAACAGGAGATACAATGTATAATCTTTTAAGGCTAGGCGAAGTTGAAACTGATAAAGATGACCGGCCTTTAAATCCACCCCCAAAGATATTATCGGTTGAGGTATTATGGAACCCATTTGAAGATATTGTGCCAAGAAATCTTCAGAAACCTCAGACTAAAGCTACACCTGATACAGAAAATAAAGGTTCGAAGCCAAAGGGTGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAAGAAAAGGAATTGGCATCAGTGAAGCAAAAGATTAAGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTTTGAGGGAGGAAACGCCCGCCAATGAAATGAATAAAGCAACAAGGGATTTGCAGTTAACTGTAAGGGATGCACTAAAAACCAAGAAGGAAGAGCCTCAGAAAGATCTAGAAACCAGTAATATTGATTCCGGTGATGACGACGACGACGGCGGCGATGAAGCAGATTTTGATGCAAGGATGCGCAGGCGAATACTGAAAAAGCGGAAGGAGTTGGGTGACCTCCCTTCCAAGCCAAAGGTGAAAAATGCAGGAAGATCCAGTCCAGATCGCCAGGATAGGTCAGCAGCCAGGTCAAATGCTTCACGGGTGGTTGATGATGATGATGATGACGATGATAAACCGAGGGCGGAAAAGTTGTCCTTAAAGAAGAAGGGAATAGGGTCTGAAGCAAGAGCTGAACGTATTGCAAATGCTGATGCAGATTTGCAGCTATTGAATGAAGTTGAGAGAGGAAGACAGTTGCAGAAGCAGAAGAGACGCAGATTACAAGGGCGTGAAGATGATGTTCTTGCTAAACTCGAGAAATTCAAGAGTTCCTTAGCAGCAAAGTCGGCACCCAAAGCCACTGAATCTGCTGATGACAACAAAGAACTGTCTGACTGGAAAGCTGTTAGCTTAAAATTTGCCCCGGATTCTGGCAAGGACCGCATGTCTCGCAATGAAGACCCGAACGACTATGTTGTGCATGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGCAAGCCAAACAGAAGAGGCGAGAACGTGAGTGGGCTGGGAAATCCCTCACGTGA | 1203 | 0.4464 | MANAGPPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKDDRPLNPPPKILSVEVLWNPFEDIVPRNLQKPQTKATPDTENKGSKPKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLREETPANEMNKATRDLQLTVRDALKTKKEEPQKDLETSNIDSGDDDDDGGDEADFDARMRRRILKKRKELGDLPSKPKVKNAGRSSPDRQDRSAARSNASRVVDDDDDDDDKPRAEKLSLKKKGIGSEARAERIANADADLQLLNEVERGRQLQKQKRRRLQGREDDVLAKLEKFKSSLAAKSAPKATESADDNKELSDWKAVSLKFAPDSGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMQAKQKRREREWAGKSLT | 400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc62860g00001 | 400 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 68 | IPR002130 | GO:0000413|GO:0003755 | |
| Stsc62860g00001 | 400 | SUPERFAMILY | Cyclophilin-like | 1 | 83 | IPR029000 | - | |
| Stsc62860g00001 | 400 | Gene3D | - | 1 | 83 | IPR029000 | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 79 | 104 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 194 | 216 | - | - | |
| Stsc62860g00001 | 400 | Coils | Coil | 107 | 134 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 352 | 400 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 320 | 400 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 121 | 270 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 253 | 270 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 121 | 150 | - | - | |
| Stsc62860g00001 | 400 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 59 | IPR002130 | GO:0000413|GO:0003755 | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 223 | 244 | - | - | |
| Stsc62860g00001 | 400 | MobiDBLite | consensus disorder prediction | 159 | 180 | - | - | |
| Stsc62860g00001 | 400 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 1 | 119 | IPR044666 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc62860g00001 | Stsc-Chr62860 | 1 | 4760 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc62860g00001 | 1 | 73 | U-box Gene Family | AT5G67530 | 42.466 | 8.62e-10 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc62860g00001 | K12737 | - | gmx:100793148 | 563.533 |