Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62792g00001 ATGGGGATTGTTTTGGATAGCAGCTGCGAGTCAATACTGCTGTCGCTGGAGACACAGAAGGCGGTGCCGGCGCCGTTCCTGACGAAGACGTACGAGCTGGTAGACGACGGCGCCACCGATCACATAGTTTCATGGGGCGAAGACAACACCACCTTCGTTGTTTGGCGTCCTCCTGAGTTCGCAAGAGACCTTCTTCCAAACTACTTCAAACACAATAACTTCTCAAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAGAAAGATTGTACCTGATAGATGGGAATTTGCAAACGAGTTCTTCAAGAAAGGGGAGAAGCATTTATTATGTGAGATTCATAGAAGAAAAACATCACACCCACATCAACATCAACAACCCATCACCATGTTGAACCATGACCATAATAATAATAATCCACACTTTTCTCCAATGGGATTTACCAACATTATTATGCCCTCTCCTACTTCCGCTACATTTTATCCTTTTCAACAACACAACAACAACAACCGAGTTAGCATCTCCCCTGACTCGGACGAGTTACCTGCTTGGTGTGACTCGGACATTATTAGCAACACTTGTTCATCCACAACGGTTTCAGCACTCTCTGAAGACAACGAAAGATTAAGGAGAAGCAACAACATCTTAATGTCCGAATTAGCACACATGAAGAAGCTCTACAATGACATAATCTACTTTGTTCAGAATCATGTTAAGCCTGTGTCACCAAGCAACACTTCTTACCCTTGTAATTTTCTTCTTCCACAACAAGCGTCGACTAATTGCAACGGTTTCTCGTCAGCGTCGCAAAAGCCAATGAACCAGTTTTTCAATAACAATAAGCAAGAACAACAACAACACCATGATTATGTGAACTCTCCAACAAACACGTCAAGGAGTTCTATAACAATGGTTGAAGATCAGCAAAGTAAGAGTAGTAATTGCAAGACCAAGCTTTTTGGTGTGTCTCTTCAATCCAACAAGAAAAGGGTACACCCTGAGTACGGATTTAGCAACGGTTTTGTGGAAACAAACAAGGCTCATCGTTTGGTGTCGGGAAACAATGACAATGATGATTATTTGGGATTGAATCTCATGCCTCCTTCTTATAATTAG 1113 0.4241 MGIVLDSSCESILLSLETQKAVPAPFLTKTYELVDDGATDHIVSWGEDNTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTSHPHQHQQPITMLNHDHNNNNPHFSPMGFTNIIMPSPTSATFYPFQQHNNNNRVSISPDSDELPAWCDSDIISNTCSSTTVSALSEDNERLRRSNNILMSELAHMKKLYNDIIYFVQNHVKPVSPSNTSYPCNFLLPQQASTNCNGFSSASQKPMNQFFNNNKQEQQQHHDYVNSPTNTSRSSITMVEDQQSKSSNCKTKLFGVSLQSNKKRVHPEYGFSNGFVETNKAHRLVSGNNDNDDYLGLNLMPPSYN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62792g00001 370 FunFam Heat stress transcription factor B-4 18 116 - -
Stsc62792g00001 370 Coils Coil 198 218 - -
Stsc62792g00001 370 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc62792g00001 370 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc62792g00001 370 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc62792g00001 370 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc62792g00001 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 302 IPR027725 -
Stsc62792g00001 370 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Stsc62792g00001 370 Gene3D - 18 117 IPR036388 -
Stsc62792g00001 370 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc62792g00001 370 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc62792g00001 370 MobiDBLite consensus disorder prediction 281 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62792g00001 Stsc-Chr62792 4670 6129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62792g00001 10 365 HSF AT1G46264 54.178 2.48e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc62792g00001 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62792g00001 K09419 - cpap:110815215 424.091