Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62742g00001 ATGGCGTCCACCGGGCTGATGCTTGTTGGTCCCAGTTCAAAATTTCTCTACATGAAGGATCTGCTCCCCTTCCCAATTTACGAATTTAAATTTGAGGAGAAAAAAATTGTGGTTGCCGAATCACTTGATCCTGCGCCTCTCCCTCTTTTCACATCATTCATCGCAAACACGCCAGGCTCAGGTGATGTCTTCTTCCATATCGATCAGAGGGTAGGTATCCAAGACTCACCTCTGTTTTATGTTCTAGAATCTGGTTCTAGAATCTGGAAACCACTAATCTCTCCTCCGAGCATAGAAAACGTGAAACTGAGTATGGTTGTCCTCCATAACAACGTTTTTGTTTCATCTTTTGTGGGAGATCCGTATTTAGCGCGTTTTGACCCTATAGACAAATCTTGGAAGGTTGAGCCCGCAGCGAAGAATAATCTTTCCAACTTTATTCGCGATTGGTTTATTGAGAGTGATGAGTCTGCTGACTTTCGTATGATTCATTATCCCCTGATTTCGGTGACCATTCCGGGTTTGGGCAGCAGCAACTACACCGTTTGCATGATGCATGAGGAGCTTCAAGTTCCTCCTAAGAACCCTGAGGTGAATGTGTTCGCCGTTCTGGTTAACCACCGCAATGGCCGGGTCGCATTTTATCAGCGCCTCTACATGTGTTTTGAGGGGATTCAACATGTGATGGATGATGGGCCACGGTTCAATGTCGTTGACCTTGGCAACGGGAAGCTTTGTGCAACACTCTGTGGGCAACAATTGGATTCGACTTCATCAGCTCTCTGTATATCAATTTTTACATTGTCTGTGGCAAAGGATTTTGCTGATTTTGCTGAACAGACAGGATGTGTGCAATTCAAACTGGATAATTTGGGGCAGGTTGTTATTGTGTATGAATCACACTATCTGAAGAATGCTCTGGCTAAGAGGACTACTGCAACACTTCCGGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTATCCCGACCGTTAGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGATGTCTTCTTAGACTTATCTGACAAGGACATGAAGCAAATTAATGCCTTATTCCGTGAGTTGGAGATGTTAAAAGCCAAAATTAAGGCAGCCAAATCAAAAGATGAGGCCGAATCTCTTAAGTTCAGTCAAAAAAATCTGATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGCTAGATGCGATACACGAGTTCGTTCTCAAGAAAAAAAGTGGGTTGCATCAGGAATTCAGGATTGATGGAGGTACAGCCGCCGCATCAAGGCAACACTTGGTTACAGATTTCCAGGAAAAGGATTTTATCAAGGCAGCTGTGCTATCCATTAAGGCTGGAGGAGTTGGATTAACTTTAACCGCTGCTAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAAGCCGAAGATCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGACGACATCATATGGGATGTAGTGCAATTCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGCTATGTCAAATAATCAGCCATTGAATAGCCCTGCAAAGCATAATACTATTGAGCATAACCCTTCAAAGCAGAAAACTCTTGACCAGTTTATCAGAAGATGTGATAAGGTGGATAGGTCAGAACATCAGCCTGACCTGAAACGACCCCGTCAATCATGA 1851 0.4317 MASTGLMLVGPSSKFLYMKDLLPFPIYEFKFEEKKIVVAESLDPAPLPLFTSFIANTPGSGDVFFHIDQRVGIQDSPLFYVLESGSRIWKPLISPPSIENVKLSMVVLHNNVFVSSFVGDPYLARFDPIDKSWKVEPAAKNNLSNFIRDWFIESDESADFRMIHYPLISVTIPGLGSSNYTVCMMHEELQVPPKNPEVNVFAVLVNHRNGRVAFYQRLYMCFEGIQHVMDDGPRFNVVDLGNGKLCATLCGQQLDSTSSALCISIFTLSVAKDFADFAEQTGCVQFKLDNLGQVVIVYESHYLKNALAKRTTATLPVIKKAQYAILLSGTPALSRPLELFKQLEALYPDVFLDLSDKDMKQINALFRELEMLKAKIKAAKSKDEAESLKFSQKNLINKIYTDSAEAKIPAVLEYLGTVIEAGCKFLIFAHHQPMLDAIHEFVLKKKSGLHQEFRIDGGTAAASRQHLVTDFQEKDFIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQFKLDNLGQMLDGHENTLAMSNNQPLNSPAKHNTIEHNPSKQKTLDQFIRRCDKVDRSEHQPDLKRPRQS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62742g00001 616 MobiDBLite consensus disorder prediction 566 586 - -
Stsc62742g00001 616 Gene3D - 259 396 IPR038718 -
Stsc62742g00001 616 MobiDBLite consensus disorder prediction 566 581 - -
Stsc62742g00001 616 FunFam Chromatin remodeling factor18 368 611 - -
Stsc62742g00001 616 Pfam Helicase conserved C-terminal domain 410 522 IPR001650 -
Stsc62742g00001 616 CDD SF2_C_SNF 406 533 - -
Stsc62742g00001 616 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 293 351 - -
Stsc62742g00001 616 SMART helicmild6 436 522 IPR001650 -
Stsc62742g00001 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 571 IPR027417 -
Stsc62742g00001 616 Coils Coil 362 382 - -
Stsc62742g00001 616 Gene3D - 397 558 IPR027417 -
Stsc62742g00001 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 411 565 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62742g00001 Stsc-Chr62742 1212 6875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62742g00001 409 562 RAD5 or RAD16-like Gene Family AT1G11100 35.714 2.87e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62742g00001 K14440 - gmx:100778246 427.557