Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62591g00001 ATGGGAACTTTCTTGTTCCAAAACCAAGTTCCTCATCATGAAGGTGAAGAAGACGATGAATACTCCATCATTGCTGCAGCAGAGATCAAAGGATCATCATCATCATCATCATCCACGCCACAAACCAGTTGCTTCACTTCTCTGACCGAGTCTGTAATCAGGAAGCTCCAAACCGCTGAAATCAACAAGGTATCATCTGTTCTTCTGATACCATACTCCGATGCGGGTCTTTTGTTAATCCGCCATCGCTGGAGCGCAATGAAGGTCCACGAAGCTTGGTTCGGAGACGAGCAAAGAGTTCGAGAACTTGTTGGCATCAACTACGTATACTCTGAAGAACAAATCCAGAGTGTTACTTGCGAGATCTGCTTTGATGAGTGCAAGAAAGTGGAGTATGCCAGGTGTGGCCATTGTTACTGCGTCGATTGCTGGAAACACTACATCGATGAGAAGATTCTAGAAGGTCCTGGTGAGTTTCTCAAACCGATGAGATGCCCTCATCCATCTTGTGAGGCTTCTTTGGAGATTGATATGATTCAGCGCTTTGCCAGCGAAGCTAACAAGAACATGTATGATCGTTTCTTGTTACGCTCTTTCGTGGAAACCAAAAAGAATATAAAATGGTGTCCAAGTCCTGGTTGCGATCTTGCTGTTCTTTATGAATTTGATGGAAACTGTCCTAACAAAAATGTAGCAAGTTGCTGTAAAGGGCATAGGTTTTGCTGGAGATGCCTTGAAGATGCTCATAGACCTGTGAGTTGTGAAACAATGGCTGAGTGGAATAATAAGAACCAGTATGAAATTCAGAGCATGATTTGGATCTCTGCTTTCACTAAAAAATGCCCTAATTGTGGGGTCAATATCGAGAAGAACGAGGGTTGCATGCACATGACTTGCATTGTTTGCTTCTACCAATTTTGCTGGCTGTGTCTTTCAGATTGGCATATGTGTTCTACCCGTGGATGTAACCGCTTCCCAACCCAGGATACTGAAAGTACCGTAATGAACAATGCAGATGCATCTTTGGACTTGCAGAGGTACACTCACTATTATGAACGTTGGTTTACCAACGAATTCTCAAGGAAAAGATGCACTGAGATCATGGAAAAGTACCTGAATGCTGAGAAAATAAGAATGATATGCAATGAATTTGAAAGGGATGAAGAAGATTTTGATTTTCTGAAGAAGGCATGGGAAGAGGTAACCAGGTGCAGGAACTTACTGAAGTGGACTTATGCATATGGTTACTTCATCCCTGCTGATGAGAAAGCTAAGAAGGAGTTGTTCGAGCACACACAAGGCGTGGCTGAGAATGCATTGGAGAAACTTCACAAGTTTGCTGAAACAATGCTGTTGGAAATCCTGAACAAGAAGAAAGACGGATTCGATACGAATAGTCTGGAATTGTCTGAACTGACTAAAGTGACCCAGAATTTCTTTGACAACATGGTTACTCAATTGGAGAATAAAGGGCTTGATGATGTGAATGTGAAGAGTTATGCTGAAATCTCCTCATCCTCATCCTCATCGTCTTCTTCAGCGCCTCGAGGTGTTGTGAGGGATGGAATGACAGAGATTGGCATCAAGAGATGCTGTTCTTGCGGTGGCTACATGCTTCGGAACACTCCAAAGTGTGGCTGTGTTGATAATAATGTGATTGAACGTAGTAGAACTCAGTTACATGAAGTTCACATGCAAGAATTAAACGAGTCTGTTGTGTGGGAGATATGTAGCGGTCCTCGTATTAGTACTCCGATGCGTGTTCTCCCCCAAGTTGTGTGGGAACTATGA 1791 0.4305 MGTFLFQNQVPHHEGEEDDEYSIIAAAEIKGSSSSSSSTPQTSCFTSLTESVIRKLQTAEINKVSSVLLIPYSDAGLLLIRHRWSAMKVHEAWFGDEQRVRELVGINYVYSEEQIQSVTCEICFDECKKVEYARCGHCYCVDCWKHYIDEKILEGPGEFLKPMRCPHPSCEASLEIDMIQRFASEANKNMYDRFLLRSFVETKKNIKWCPSPGCDLAVLYEFDGNCPNKNVASCCKGHRFCWRCLEDAHRPVSCETMAEWNNKNQYEIQSMIWISAFTKKCPNCGVNIEKNEGCMHMTCIVCFYQFCWLCLSDWHMCSTRGCNRFPTQDTESTVMNNADASLDLQRYTHYYERWFTNEFSRKRCTEIMEKYLNAEKIRMICNEFERDEEDFDFLKKAWEEVTRCRNLLKWTYAYGYFIPADEKAKKELFEHTQGVAENALEKLHKFAETMLLEILNKKKDGFDTNSLELSELTKVTQNFFDNMVTQLENKGLDDVNVKSYAEISSSSSSSSSSAPRGVVRDGMTEIGIKRCCSCGGYMLRNTPKCGCVDNNVIERSRTQLHEVHMQELNESVVWEICSGPRISTPMRVLPQVVWEL 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62591g00001 596 SMART ibrneu5 265 322 IPR002867 GO:0008270
Stsc62591g00001 596 SMART ibrneu5 189 254 IPR002867 GO:0008270
Stsc62591g00001 596 FunFam RBR-type E3 ubiquitin transferase 114 203 - -
Stsc62591g00001 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 204 IPR013083 -
Stsc62591g00001 596 Pfam Ariadne domain 338 497 IPR045840 -
Stsc62591g00001 596 SUPERFAMILY RING/U-box 117 198 - -
Stsc62591g00001 596 ProSiteProfiles TRIAD supradomain profile. 116 326 IPR044066 -
Stsc62591g00001 596 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 42 411 IPR031127 GO:0004842|GO:0016567
Stsc62591g00001 596 Pfam IBR domain, a half RING-finger domain 266 316 IPR002867 GO:0008270
Stsc62591g00001 596 Pfam IBR domain, a half RING-finger domain 190 254 IPR002867 GO:0008270
Stsc62591g00001 596 SUPERFAMILY RING/U-box 191 261 - -
Stsc62591g00001 596 CDD BRcat_RBR_ANKIB1 196 263 - -
Stsc62591g00001 596 SUPERFAMILY RING/U-box 265 318 - -
Stsc62591g00001 596 Gene3D - 250 494 - -
Stsc62591g00001 596 ProSiteProfiles Zinc finger RING-type profile. 120 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62591g00001 Stsc-Chr62591 3704 5778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62591g00001 61 496 C3H Transcription Factor Family AT2G31510 42.478 1.64e-116 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62591g00001 K11968 - aip:107632220 814.683