Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62558g00001 ATGAAAGTTTCAGGAGCATTATTGCCTCAAAAGAAGACTACTGTTGGGGAGCAAACACAAATGAAACTTGATGAACTACCGTTGTTTGAATTTGAAAAGCTTTCAACTGCTACAAACAACTTTCATGCTAGTAACCTGCTTGGGAAAGGAGGATTTGGTCCAGTATATAAGGGACAATGGGAAGATGGACAAGAAATCGCAGTGAAAAGATTATCCAAAGCATCTGGCCAAGGGGTGGAAGAATTTATGAATGAAGTCGTGGTTATATCGAAACTTCAACATCGCAATCTTGTTAGACTACTTGGTTGTTGCATCGAACGCGACGAACAGATGTTGGTCTATGAGTTCATGCCAAACAAAAGTTTGGATGCTTTTCTCTTTGATCCACAGCAAAGAAAAGTCTTAGATTGGAAAAAACGTTTTAAAATAATCGAAGGAATAGCTCGTGGTATACTTTATCTTCATAGAGATTCAAGACTTAGAATCATACACAGAGATCTTAAGGCAAGTAACATCTTGCTGGATGATGAGATGAATCCAAAAATATCAGATTTCGGTTTAGCTAGAATTTTTAGAGGAGGTGAAGATGATGAAGCTAATACAAAAAGAGTTGTTGGAACATACGGCTACATGCCACCTGAATATGCAATGGAAGGGCTTTTCTCAGAGAAATCAGATGTTTACAGCTTTGGAGTTCTGTTACTTGAGATTGTGAGCGGGCGAAGAAACACCAGCTTTTATAACCATGAGCAATCACTAAGCCTTGTTGGATATGCATGGAAACTGTGGAATGAAAAGAACATCACATCTTTAATAGATCCAGAGATCAAGGATTCATGCTTTGAGAAAAGCATTTTGAGGTGCATACACATAGGACTTTTATGTGTGCAAGAATTGACAAAAGAAAGACCAACTATATCCACTGTAGTTTTGATGCTAATAAGTGAGATTACACATCTTCCTCCACCAGGGCAAGTTGCATTTGTCCATAAACAAAATCTGCACAGTTCTGAATCCTCTCAAAAAAGTCACCAATCCAACTCAAACAACAATGTAACTCTTACTGAATTAGAAGGAAGATAA 1083 0.3777 MKVSGALLPQKKTTVGEQTQMKLDELPLFEFEKLSTATNNFHASNLLGKGGFGPVYKGQWEDGQEIAVKRLSKASGQGVEEFMNEVVVISKLQHRNLVRLLGCCIERDEQMLVYEFMPNKSLDAFLFDPQQRKVLDWKKRFKIIEGIARGILYLHRDSRLRIIHRDLKASNILLDDEMNPKISDFGLARIFRGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFYNHEQSLSLVGYAWKLWNEKNITSLIDPEIKDSCFEKSILRCIHIGLLCVQELTKERPTISTVVLMLISEITHLPPPGQVAFVHKQNLHSSESSQKSHQSNSNNNVTLTELEGR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62558g00001 360 CDD STKc_IRAK 47 313 - -
Stsc62558g00001 360 ProSiteProfiles Protein kinase domain profile. 41 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc62558g00001 360 SUPERFAMILY Protein kinase-like (PK-like) 26 338 IPR011009 -
Stsc62558g00001 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 117 321 - -
Stsc62558g00001 360 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 360 - -
Stsc62558g00001 360 Pfam Protein tyrosine and serine/threonine kinase 43 310 IPR001245 GO:0004672|GO:0006468
Stsc62558g00001 360 Gene3D Transferase(Phosphotransferase) domain 1 117 320 - -
Stsc62558g00001 360 Gene3D Phosphorylase Kinase; domain 1 15 116 - -
Stsc62558g00001 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Stsc62558g00001 360 PIRSF TyrPK_CSF1-R 290 358 - -
Stsc62558g00001 360 PIRSF TyrPK_CSF1-R 120 243 - -
Stsc62558g00001 360 PIRSF TyrPK_CSF1-R 38 126 - -
Stsc62558g00001 360 MobiDBLite consensus disorder prediction 337 360 - -
Stsc62558g00001 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 7 116 - -
Stsc62558g00001 360 SMART serkin_6 41 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62558g00001 Stsc-Chr62558 6991 8699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62558g00001 29 346 Receptor kinase-like Gene Family AT4G11480 59.202 5.93e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc62558g00001 PK_Tyr_Ser-Thr 6.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62558g00001 - - gmx:100786846 609.372