Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62547g00001 ATGAAGGATTCGATTTTTTGTTGGTGTTGGATTTGTTTTGTTTTTATGGTTTTTCTCTTTTGTAATTTGGGGTTTGAGGGATCAAGAGCAATGGAGTCTCGGATGGATAAGTATAAGATCATGGAACAGATCGGAAGAGGTGCTTTTGGAGTTGCCATCCTTGTAAATCGCAAAGCAGAAAAGAAAAAATATGTGTTGAAGAAAATTAGGCTTGCTATGCAGATTGAAAGATGCAGTAGATCTGCACATCAAGAGATGGCTCTGATTGCTAGAATCCAGCATCCTTACATTATAGAATTCAAGGAGCATGGGTTGAGAAGGGCAAGTGTGTGA 333 0.3874 MKDSIFCWCWICFVFMVFLFCNLGFEGSRAMESRMDKYKIMEQIGRGAFGVAILVNRKAEKKKYVLKKIRLAMQIERCSRSAHQEMALIARIQHPYIIEFKEHGLRRASV 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62547g00001 110 Gene3D Phosphorylase Kinase; domain 1 22 109 - -
Stsc62547g00001 110 SUPERFAMILY Protein kinase-like (PK-like) 30 107 IPR011009 -
Stsc62547g00001 110 ProSiteProfiles Protein kinase domain profile. 38 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc62547g00001 110 Pfam Protein kinase domain 38 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc62547g00001 110 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Stsc62547g00001 110 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 35 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62547g00001 Stsc-Chr62547 3061 3968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62547g00001 35 102 Core Cell Cycle Gene Families AT3G48750 33.824 1.33e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc62547g00001 Pkinase 8.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62547g00001 K08857 - qsa:O6P43_028578 136.346