Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62446g00003 ATGAAGAAGAACACGAGCTTGTCAACGTCAGCTGCAAGCAGCATGAACATGGGGAGGAGGGCACTAGCTCAGTACAGTGCAGACGCTGAGATTCTGGCTGAATTCGAGCAATCAAATGTGTCCGGTAAATCATTCGACTACACAAAGTCAGTCGTGGACCCTCCCAAATCAGTCTCGGAACAGAAGATGACTGCCTACCTCTCCACAATCCAAAGGGGCGGACTCATCCAGCCCTTCGGTTGCATGCTCGCAGTCCAAGAACCCACTTTCAACATCATTGCCTACAGCCACAATTCCCTCCATCTCCTGGGTCTCGACACTCAATTATTCGATGCACTTCTTGGAGTTGATGCCACCACACTCTTTACTCCTGCTTCGGGAGCTTCCCTCTCCAAAGCTGTTGCCTCAAGGGAAATCTCGCTGCTTAATCCTGTTTGGGTATACGCTAAGGCCACGCAGAAGCCGTTCTACGCAATACTTCACCGGATTGATGTTGGAGTTGTCATTGATTTGGAGCCTGCAAGGTCTAGTGACCCTGCATTGTCCTTCGCCGGCGCGGTTCAGTCGCAGAAGCTGGCGGTTAGAGCTATTTCGCGGCTGCAGTCGCTTCCCGGCGGAGACATTGGTGTTCTGTGTGACTCTGTTGTAGGGGAAGTTCAAAAGCTTACTGGATACGACAGAGTTATGGTGTATAAATTCCACGAGGATGATCACGGCGAGGTGGTTTCGGAGATTCGGAGGTCCGATTTGGAGTCTTATTTGGGTCTCCACTACCCTGCCACTGATATTCCTCAAGCCACCAGATTCTTGTTCAAGCAGAATCGCGTTCGGATGATTTGTGATTGCAATGCTAAGCCTGTTAAGGTAAGTCAGACTCAAGAGTTGAGCCAACCACTTTGCTTGGTGAACTCAACTCTAAGGGCGCCACACGGTTGTCACACTCAGTATATGGCAAACATGGGCTCCATTGCTTCTCTGGTCATGTCCATTGTGGTAAATTCCAAAGATTCCACTAGGCTATGGGGTTTGCTAGTGTGCCATCACACTGCCCCGCGCTACGTGCCTTTTCCGGTTCGCTACGCTTGTGAGTTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAAATTCAGTTAGCAGCTCAAATGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGTGATGCGCCGTTTGGGATTGTTACTCAGTCTCCTAACATCAAGGATCTTGTCAAGTGTGATGGTGCTGCCCTGTATTATGATGGGAGTTGTTGGTTGTTAGGCACAACGCCGTCCAAATCGCAGGTAAAAGACATTGCTGAATGGTTGCTTAGCACGCACGGCGACTCGACCGGTTTGAGTACGGATAGTTTGGCTGATGCTGGTTATCCTGGTGCTGCTTTGCTTGGGGATGCAGTTTGTGGCATGGCAATGGCACGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGGTCTCACACGGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCTGAGGATAAGGATGATGGAGGGAAAATGAATCCGAGGTCTTCATTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATGAGAGATTCATTTCACAATGCAGAAAATAGTGGTATTAAGGCTATAAACTACATACAGAGAAGTGATGCTTCAAGTGGTGGGATTGATGAGCTAAGTTCGGTAGCATTAGAAATGGTGAGGTTAATTGAGACGGCAACTGTCCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGATGGAATGCAAAAATTGCTGAATTGACAGGTTTGCCGGCAACTGAAGCTATTGGAAAATCACTAGTGAATGAGGTAGTTCATGCAGACTCGCGCGGAAATCTTGAAAATATTCAAAGTAGAGCCTTGCAAGGCATGGAGGACAAGAATTTTGAATTGAAATTGAAACACTTTGGGAATCAACATCAAAATGAAGTTGTATATCTCATAGTGAATGCTTGTACAAGTAGAGATTACACAAATGCTGTCGTTGGGGTATGCTTTGTAGGCCAAGATATCACTTGTGAGAAAATTGTTCTAGACAAGTTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAAAGTCTGAATCCGCTGATTCCACCAATATTTGCTTCCGATGAGAGCGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGATGAAGTTATAGGAAAACTGCTTGCTGGGGAAATCTTTGGAAGCTTTGTTAGATTGAAGGGTCAAAATACACTGACTAACTTTATGATCTTGCTTTACCGGGGAATTAGTGGACAAGAATTCGACAAGTTCCCCTTCGGATTTTTCGATAGGAATGGAGAGTTTATACAGGCTTACATTACTGCAAACAAGAGGATCGATACAAGTGGGAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCCGAATCAGCCTTCTGATGGACGAAATCCCCCTCAGGAAAGGAAGAGCATCTCTGAATCTAAGGAGTTCGCTTATATATTACAAGAGATGAAGAATCCTTTAAACGGTATTCGGTTTACGCATAAGCTTCTAGAAGATACAGCTGTCTCAGAAAGCCAGAAACAGTTTCTTGATACTAGTGATGCCTGTGAAAGACAGATAATGGCAATTATTGAGGAGACAGATTTAGGAAGTGTCAATGAAGGGTAA 2799 0.458 MKKNTSLSTSAASSMNMGRRALAQYSADAEILAEFEQSNVSGKSFDYTKSVVDPPKSVSEQKMTAYLSTIQRGGLIQPFGCMLAVQEPTFNIIAYSHNSLHLLGLDTQLFDALLGVDATTLFTPASGASLSKAVASREISLLNPVWVYAKATQKPFYAILHRIDVGVVIDLEPARSSDPALSFAGAVQSQKLAVRAISRLQSLPGGDIGVLCDSVVGEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLESYLGLHYPATDIPQATRFLFKQNRVRMICDCNAKPVKVSQTQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNSKDSTRLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGSCWLLGTTPSKSQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAALLGDAVCGMAMARISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIMRDSFHNAENSGIKAINYIQRSDASSGGIDELSSVALEMVRLIETATVPIFGVDTGGLINGWNAKIAELTGLPATEAIGKSLVNEVVHADSRGNLENIQSRALQGMEDKNFELKLKHFGNQHQNEVVYLIVNACTSRDYTNAVVGVCFVGQDITCEKIVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLAGEIFGSFVRLKGQNTLTNFMILLYRGISGQEFDKFPFGFFDRNGEFIQAYITANKRIDTSGNMIGCFCFLQIVSRDPNQPSDGRNPPQERKSISESKEFAYILQEMKNPLNGIRFTHKLLEDTAVSESQKQFLDTSDACERQIMAIIEETDLGSVNEG 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62446g00003 932 SUPERFAMILY GAF domain-like 385 562 - -
Stsc62446g00003 932 ProSiteProfiles PAS repeat profile. 592 663 IPR000014 -
Stsc62446g00003 932 SUPERFAMILY GAF domain-like 187 373 - -
Stsc62446g00003 932 CDD PAS 603 710 IPR000014 -
Stsc62446g00003 932 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 207 367 IPR016132 -
Stsc62446g00003 932 SMART pas_2 725 794 IPR000014 -
Stsc62446g00003 932 SMART pas_2 594 661 IPR000014 -
Stsc62446g00003 932 FunFam Phytochrome 588 720 - -
Stsc62446g00003 932 Pfam Phytochrome region 390 564 IPR013515 GO:0006355|GO:0009584
Stsc62446g00003 932 SUPERFAMILY PYP-like sensor domain (PAS domain) 740 842 IPR035965 -
Stsc62446g00003 932 Gene3D PAS domain 739 851 - -
Stsc62446g00003 932 Pfam His Kinase A (phospho-acceptor) domain 870 930 IPR003661 GO:0000155|GO:0007165
Stsc62446g00003 932 Pfam PAS fold 65 174 IPR013654 GO:0006355
Stsc62446g00003 932 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 178 IPR035965 -
Stsc62446g00003 932 ProSiteProfiles PAS repeat profile. 726 778 IPR000014 -
Stsc62446g00003 932 SMART gaf_1 207 387 IPR003018 GO:0005515
Stsc62446g00003 932 ProSitePatterns Phytochrome chromophore attachment site signature. 307 316 IPR013516 -
Stsc62446g00003 932 NCBIfam PAS domain S-box protein 599 713 IPR000014 -
Stsc62446g00003 932 CDD PAS 737 845 IPR000014 -
Stsc62446g00003 932 Gene3D - 382 555 IPR043150 -
Stsc62446g00003 932 Gene3D PAS domain 69 310 - -
Stsc62446g00003 932 FunFam Phytochrome 739 847 - -
Stsc62446g00003 932 SUPERFAMILY PYP-like sensor domain (PAS domain) 598 706 IPR035965 -
Stsc62446g00003 932 Gene3D - 188 538 IPR029016 -
Stsc62446g00003 932 Pfam PAS fold 595 710 IPR013767 GO:0006355
Stsc62446g00003 932 Pfam PAS fold 726 845 IPR013767 GO:0006355
Stsc62446g00003 932 SMART HisKA_10 868 932 IPR003661 GO:0000155|GO:0007165
Stsc62446g00003 932 PRINTS Phytochrome signature 525 543 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 222 241 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 688 705 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 122 144 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 492 511 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 407 427 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 595 611 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 614 629 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 708 728 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 PRINTS Phytochrome signature 307 328 IPR001294 GO:0006355|GO:0009584
Stsc62446g00003 932 FunFam Phytochrome 188 388 - -
Stsc62446g00003 932 CDD HisKA 868 923 IPR003661 GO:0000155|GO:0007165
Stsc62446g00003 932 FunFam Phytochrome 382 512 - -
Stsc62446g00003 932 Gene3D PAS domain 593 720 - -
Stsc62446g00003 932 PANTHER OS08G0260000 PROTEIN 61 928 - -
Stsc62446g00003 932 Pfam GAF domain 207 377 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62446g00003 Stsc-Chr62446 5962 9406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62446g00003 8 932 Histidine Kinase Gene Family AT4G18130 64.444 0.0 1263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62446g00003 K12123 - gmx:100808192 1559.27