Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62401g00001 ATGAGTGAAAGTGGCAGAAAACGCTCTTCAAAGTGGGATAATAGAGATGATCCTGAATTTGCACCTGATAGTAAGCACTTGCGTTCTGGATGGTCATCTGGAGATGTTGCTGGTAGTAACAACTCGAAGTGGTCTTATATGGAAGGAAATGACAAGATGAAACCCCGTATTGGTAAGGAACCTTTTTCTGGAGGCAGGGGTTCAAATAAAGACGATGTTATGAGTAAAGACTATAGATGTTTGGATGCAAAAATGGACTGGGAGGCAGATGCAAGTTACAGCAGGAGACACAGTCAATCCCCAAACTGTGGTTGGGGCAGGTCAGGCAGGAGTAGTAGAAGCAGAAGCCCTCCCCATGGTTACAAGTGGGAATCAGGAGGCAATGACAGAAACAGAACAAGGGCTGCCGAATCAAAACAAATATGCAGAGATTTTGCTGTTGGAAAATGTAGAAGAGGAAGCCATTGCTATTTTCTTCACCATGATGACCAAACTTATGAGGATATTCGGGAAAGTAAAAACCGGGAAGATGGAGCTCCAAGATATTCTGCTTCACATGAGAGCAGGGAACATACTCTTAAGAGTAGATCCACTGAAGCTTGTGTTCATTTTGCAAAAGGCAGATGTAGAATGGGAGCATCATGCAAATATGTGCATCATAACAATTCTGATGAATATGGTAAAGGTTCTCTGGATGACTTAACTAGAGAAAGGGAAAATGATGGAAGGCGCAGAGATAATTCTTTTGAGCAGGGTGGTGGGCACATGCCAGGCCGCAGTGGTGATACACTTTGCAAATTTTTTGCGAATGGAAATTGTCGTAATGGTAAACATTGTAGGTTTTCTCATGATAGGCAAGAAAGAAGCTTAAGGGATGATAGACGGGGAAGCAATCTTGCTGGAGATCATCAGACACTGGATAGACCAAAATTGAGTGATTCAGTTAGTCCTACTGGAAGGCTTAGAAGTGATAGATGGGGTACAGATGGCATTATGACTGATAAGGATAAAGTATGGGACAATCCAAACCGGAATGATATAGCTAATATCTATGATTCAGCGAAGTTGGTCGAAGGAAAACCTGGAGATACAGGTGCCACTGAGCATGAACAAACTGTATGGCCTGAGAAGGAAGGATGGGGTCATAGTTCAGACCTGAGCAGGGTGCAAGGTGAACCGCCATTTCCAAGTGATAAGAAGGAAGCTGACCATTGGATAGCAGACAGTGCTGGTGCCAACATGCCTGTTTCCCAATCAGTAGCTGCAGACATCTGGCCTGGGGATGCAAAAATGTCTCCTGATTGGAATTATAGAACAGGATCTTCCACCCGTACGGAAGTAGAGCATGGGAAGAATGATCATGGGTTAACCCAGGGAAGCACATATCCAGCCACCGCTGAACATGATAGAATTCAAGTTACAGGGCAAGGTTTTAATCAGAATGTGCAAAATGTTAATCCTTTGAATTTGTCAAGCTCCCATGGAGTTGGACAAAATCAAGGGACAGTTCCTATTCTTCCTTCAAGAGCAGGAATTCCTGATGGTATGCAAAAGCAAGGAGTCTCTGCTGAGCCAAATATCATGGGTGCAGGCTCATCACATATTAGTTCAAGTAATCCTCCCACACAGGACACAGTTAGCAAGGAGCAGCTTGCTCAACTTTCCAATCTCTCAGCCTCTCTGGCTCATATCCTTGGATCTGGTCAGCAGCTGCCACAACTTTATGCTGCCTTAAATTCTCATAATGCAAATGACACTCCCTCCTTAGCCAAAACTGAAGTGCCTTCTATGCCTGTTTCCAATACATATGTCAAGCCAGATCCGGCTAGTGGATTTGTAAAGCAGTATGATCCAATGAGTGATAGTATTGACATAAAGGATGCTGATGCAAGTGGGGTCTGTCCAGTTGTTTCTCCAATTAAAAAAAGTGCAAATATAGAAGTTCCATTGGTGTTGTCAAACACTGGGAAACAAAATTGTAGTGATACTTCTAAGGATCCCTCCTCAGAAGAACAACGTGTGAAGAATGAACATCTGATTCAATTGCAGCCAAGCCAAAACATTCAGATACAAAAGGAATCCAATGAAGTGGTAGCTGAGGATAGGCCAAATCCTCATGATCATAAAATTACAAAAGAGAACGGTCCTTCGGAAAACATAGACCACAATGGTGTTGAGGCCAATAAAAGCAAGGATGTAAAGGGGATTCGTGCATTCAAATTTTCATTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGAAAAATCACGAAAGACGATTATAAAACAATTGTGAAGAAGGTTGTAGATAAAGTAACCGGTACGATGCAGGGAGCCCATATTCCTCAGACTCAAGAGAAAATTGACCATTATTTGTCATTTTCGAAACCAAAGCTTAACAAACTTGTACAGG 2425 0.426 MSESGRKRSSKWDNRDDPEFAPDSKHLRSGWSSGDVAGSNNSKWSYMEGNDKMKPRIGKEPFSGGRGSNKDDVMSKDYRCLDAKMDWEADASYSRRHSQSPNCGWGRSGRSSRSRSPPHGYKWESGGNDRNRTRAAESKQICRDFAVGKCRRGSHCYFLHHDDQTYEDIRESKNREDGAPRYSASHESREHTLKSRSTEACVHFAKGRCRMGASCKYVHHNNSDEYGKGSLDDLTRERENDGRRRDNSFEQGGGHMPGRSGDTLCKFFANGNCRNGKHCRFSHDRQERSLRDDRRGSNLAGDHQTLDRPKLSDSVSPTGRLRSDRWGTDGIMTDKDKVWDNPNRNDIANIYDSAKLVEGKPGDTGATEHEQTVWPEKEGWGHSSDLSRVQGEPPFPSDKKEADHWIADSAGANMPVSQSVAADIWPGDAKMSPDWNYRTGSSTRTEVEHGKNDHGLTQGSTYPATAEHDRIQVTGQGFNQNVQNVNPLNLSSSHGVGQNQGTVPILPSRAGIPDGMQKQGVSAEPNIMGAGSSHISSSNPPTQDTVSKEQLAQLSNLSASLAHILGSGQQLPQLYAALNSHNANDTPSLAKTEVPSMPVSNTYVKPDPASGFVKQYDPMSDSIDIKDADASGVCPVVSPIKKSANIEVPLVLSNTGKQNCSDTSKDPSSEEQRVKNEHLIQLQPSQNIQIQKESNEVVAEDRPNPHDHKITKENGPSENIDHNGVEANKSKDVKGIRAFKFSLVEFVKELLKPTWKEGKITKDDYKTIVKKVVDKVTGTMQGAHIPQTQEKIDHYLSFSKPKLNKLVQ 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 226 257 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 1 74 - -
Stsc62401g00001 808 Pfam CCCH-type zinc finger 264 284 IPR041367 -
Stsc62401g00001 808 Pfam RNA-binding, Nab2-type zinc finger 200 219 - -
Stsc62401g00001 808 Pfam RNA-binding, Nab2-type zinc finger 141 160 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 33 47 - -
Stsc62401g00001 808 SUPERFAMILY CCCH zinc finger 262 284 IPR036855 GO:0046872
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 92 135 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 700 725 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 1 24 - -
Stsc62401g00001 808 Gene3D - 131 231 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 169 191 - -
Stsc62401g00001 808 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 440 460 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 377 400 - -
Stsc62401g00001 808 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 94 115 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 226 250 - -
Stsc62401g00001 808 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 655 674 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 283 328 - -
Stsc62401g00001 808 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Stsc62401g00001 808 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Stsc62401g00001 808 SMART c3hfinal6 137 162 IPR000571 GO:0046872
Stsc62401g00001 808 Gene3D - 254 309 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 283 309 - -
Stsc62401g00001 808 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 808 - -
Stsc62401g00001 808 MobiDBLite consensus disorder prediction 700 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62401g00001 Stsc-Chr62401 407 6062 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc62401g00001 zf-CCCH_4 7.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62401g00001 - K22909 gmx:100783856 939.488