Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62389g00001 ATGGAGCCTAATAACAATTCTTCCTCTTATAATAATAATGTTGTTGTTACTACTACCGATGATGATGAGAAGGCACTAGAGAAAAAGAAAGGTATAATAATAAGATACATGGAATGTCTGAAGAACCATGCAGCTTCACTTGGTGGCAATGCAACTGATGGGTGTGGTGAGTTCATGCCTTGTGGTGAACAAGGTACCATTGAAGCACTCACCTGTTCTGCATGCAATTGCCATAGAAACTTTCACAGGAAGGAGATTCAATCTCATCAAACTCATCATCATCATCAAATGATAATGAACCCTATATTTGCACACTCAATTAGTAGCTTTTCTGATCAATCTTACGATCATAATCATCATAAGAATAACAAGGATTATTGCGAAGAAAGGGTAGTGGTGAAGACGAAGAAGAGGTTCAGGACAAAGTTCACACAAGAACAGAAGGAGAAGATGCTCGATTTCACGGAGAAGGCAGGCTGGAAGATACAGAAGCTAGATGAATCAATGGTGAACAAGTTTTGCCAAGAACTTGGGATCAAGAGAAGGGTACTCAAGGTTTGGATGCACAATAACAAGAATACTTTTGCTGCCAAGAACAAAAATAAGAATCTTCCAACAACCACCTAG 627 0.3892 MEPNNNSSSYNNNVVVTTTDDDEKALEKKKGIIIRYMECLKNHAASLGGNATDGCGEFMPCGEQGTIEALTCSACNCHRNFHRKEIQSHQTHHHHQMIMNPIFAHSISSFSDQSYDHNHHKNNKDYCEERVVVKTKKRFRTKFTQEQKEKMLDFTEKAGWKIQKLDESMVNKFCQELGIKRRVLKVWMHNNKNTFAAKNKNKNLPTTT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62389g00001 208 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 194 - -
Stsc62389g00001 208 Pfam ZF-HD protein dimerisation region 34 86 IPR006456 -
Stsc62389g00001 208 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 36 85 IPR006456 -
Stsc62389g00001 208 FunFam Zinc-finger homeodomain protein 2 121 197 - -
Stsc62389g00001 208 NCBIfam homeobox domain, ZF-HD class 136 193 IPR006455 -
Stsc62389g00001 208 SUPERFAMILY Homeodomain-like 132 194 IPR009057 -
Stsc62389g00001 208 Gene3D - 117 198 - -
Stsc62389g00001 208 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 35 86 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62389g00001 Stsc-Chr62389 1785 2411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62389g00001 30 199 ZF-HD Transcription Factor Family AT1G14440 52.913 9.87e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc62389g00001 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62389g00001 - - adu:107466050 293.123