Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62369g00001 ATGGAATTCGATTCTGCAATTCCCATGTCCCGTGAAGCCATCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGCGAAACAATGGAGCCTGGACCTTATCCTGAGCATCCAGGAGAACCGGATTGTTCATATTACATCAGAACAGGACTCTGTAGATTCGGAGCAACATGTCGATTTAACCATCCTCCTAACAGGAAGCTGGCTATTGCCGCTGCGCGGATGAAAGGAGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACAGGTACTTGCAAATTCGGAGCCACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATAGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCACTCCGCCCAAATGAGGCGGAATGCGCTTATTATTTAAGAACCGGACAGTGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGGTGCTTTCGATGCGCAGTTCGCCTGTTTATCCCACCGTCCATTCTCCAACAACACCAGGTCAGCAGTCATATGCAGCAGGAATTACAAACTGGTCAAGTTCATCCTACATTGCTAGTCCTCGCTGGCAAGGTCCATCGAGTTATGCATCTTTGATTCTACCTCAGGGAGTGGTTTCGGTACCTGGCTGGGGTGCATACAATGGTCAAATGGGATCAGACAGTGCACAACAAGCAGTTGGAAATGGTCAAACATATGCATCCTCTCGCCAAGGCGAATCAGCAAATGCAGGATCCCAGGGAGCATATTCTCAATACCGTTCTGGATCAGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAAAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACCGGAGATTGTAAGTTTGGTGCAGTCTGCCGTTTCCATCATCCGCGTGAGAGGCTGATTCCTGCTCCTGATTGTCTTTTGAGTCCCATTGGCCTTCCTTTACGTCCTGGAGAGCCGTTGTGTGTCTTTTACTCGCGTTATGGTATATGCAAATTCGGCCCGAGTTGCAAGTTCGACCACCCCATGGGAATCTTCACCTATAATATATCTACATCACCCTCAGCTGACGCGTCAGGACGGCGACTGTTGGGTTCTTCATCAGGAACTGCAGCATTAAATTTATCATCAGAAGGACTAGTCGAGTCAGGCTCCGCGAAGCCGAGGAGGCTTTCGTTATCGGAGACTAGACAACTTCCTTCCAGTGATGATAACATTGATGATGAGGGATAA 1281 0.4762 MEFDSAIPMSREAIPQDAMWQMNLRSSETMEPGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEAECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVHSPTTPGQQSYAAGITNWSSSSYIASPRWQGPSSYASLILPQGVVSVPGWGAYNGQMGSDSAQQAVGNGQTYASSRQGESANAGSQGAYSQYRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISTSPSADASGRRLLGSSSGTAALNLSSEGLVESGSAKPRRLSLSETRQLPSSDDNIDDEG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62369g00001 426 MobiDBLite consensus disorder prediction 234 260 - -
Stsc62369g00001 426 MobiDBLite consensus disorder prediction 395 426 - -
Stsc62369g00001 426 FunFam Zinc finger nuclease 2 37 114 - -
Stsc62369g00001 426 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Stsc62369g00001 426 FunFam CCCH type zinc finger protein 284 372 - -
Stsc62369g00001 426 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Stsc62369g00001 426 SUPERFAMILY CCCH zinc finger 290 316 IPR036855 GO:0046872
Stsc62369g00001 426 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Stsc62369g00001 426 SUPERFAMILY CCCH zinc finger 131 157 IPR036855 GO:0046872
Stsc62369g00001 426 Gene3D - 117 164 - -
Stsc62369g00001 426 Gene3D - 284 364 - -
Stsc62369g00001 426 Gene3D - 37 116 - -
Stsc62369g00001 426 PANTHER PROTEIN PHOSPHATASE RELATED 18 378 - -
Stsc62369g00001 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Stsc62369g00001 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Stsc62369g00001 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 359 IPR000571 GO:0046872
Stsc62369g00001 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Stsc62369g00001 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 313 IPR000571 GO:0046872
Stsc62369g00001 426 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Stsc62369g00001 426 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Stsc62369g00001 426 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Stsc62369g00001 426 SUPERFAMILY CCCH zinc finger 335 359 IPR036855 GO:0046872
Stsc62369g00001 426 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Stsc62369g00001 426 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Stsc62369g00001 426 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Stsc62369g00001 426 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Stsc62369g00001 426 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Stsc62369g00001 426 SMART c3hfinal6 38 65 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62369g00001 Stsc-Chr62369 3964 9183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62369g00001 19 424 C2H2 Transcription Factor Family AT3G02830 63.768 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc62369g00001 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62369g00001 - - gmx:100786261 826.239