Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62355g00001 ATGTCCTTCCGAAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGATTTAAGGCTTCCTGGCCATCACAGGGGCAAGTCGCGTAGCTCTGTCCATGAATTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCACCCGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAAGCTAGTGAGAGTACCTGGCCTGGCCGTAAGCATGTGGTTGCGTGCGCAGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATCGTGAGCAGTCCTGAATACTGTGGGAAGATTACTTTCCCTATTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAGACTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGCAAGTTTCTTCTAGCTGCAAAACGAACCAGAAGGACAACTTGCACTGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGCAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCACCAGGCCGGAGCCGCAGGTTTAATTCGAAAAAGGTCTCTCCTAAGCTCCCTAGTGGCAGCTATAATATTGCCCAGGTCAACTATGAGTTGAATGTCCTTGGTACTAGGGGCCCAAGAAGGATGCATTGCACCATGTATTCAATCCCCACATCATGCCTTGAGCCCGGCGGGTCTGTTCCAGGCCAGCCGGAGCTCCTTCCCCCCTCCCTCGAGGATTCATTCCGAAGTATCTCCTTCTCTAAGTCAATTGGTCACTCAACTGAGTTTAGCAGCTCTAGATTCTCGGACATAATTGGCGCCGGAAACGAGGATGTGGAGGGAAAGGAGAGACCACTAGTCCTTAAGAATAAGCCTCCAAGATGGCATGAACAGCTGCAGTGTTGGTGCCTTAACTTCAGGGGAAGGGTGACCGTCGCTTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATGCACAGCCTGCAGCTCCTCCTCCTCCTGCTGCTGCTGCAGGAACAGGAGCAACAACATCTCAGCCGTCGCAGTCTGACCCGGACAAGATCATTCTTCAGTTTGGTAAGGTTGGCAAGGATATGTTCACAATGGATTACCGTTACCCTCTATCAGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1305 0.4851 MSFRSIVRDVRDGFGSLSRRSFDLRLPGHHRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEYCGKITFPISLKQPGHRDGPIQCFIKRDKTKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKLPSGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPTSCLEPGGSVPGQPELLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDIIGAGNEDVEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANAQPAAPPPPAAAAGTGATTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62355g00001 434 Pfam Tub family 114 429 IPR000007 -
Stsc62355g00001 434 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Stsc62355g00001 434 Pfam F-box domain 53 100 IPR001810 GO:0005515
Stsc62355g00001 434 MobiDBLite consensus disorder prediction 369 391 - -
Stsc62355g00001 434 Gene3D Tubby Protein; Chain A 111 434 IPR025659 -
Stsc62355g00001 434 Gene3D - 48 101 - -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Stsc62355g00001 434 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Stsc62355g00001 434 FunFam Tubby-like F-box protein 110 434 - -
Stsc62355g00001 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Stsc62355g00001 434 CDD F-box_AtTLP-like 53 97 - -
Stsc62355g00001 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Stsc62355g00001 434 PANTHER TUBBY-RELATED 42 432 - -
Stsc62355g00001 434 FunFam Tubby-like F-box protein 48 101 - -
Stsc62355g00001 434 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62355g00001 Stsc-Chr62355 1 3626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62355g00001 1 434 TUB Transcription Factor Family AT1G76900 69.063 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc62355g00001 Tub 1.5e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62355g00001 K19600 - gmx:100817532 772.311