Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62322g00003 ATGGCAAATCCAGTTGATGAACATTCTGCAACTAAGAGTAGTAACAAGCATGATGTTTTTCTGAGTTTTAGGGGCAAAGACACGCGTTACACGTTCACTGGTTATCTCTACGATGCATTGTGCAGGAAGGGAATCAAAGTCTTCATGGATGATGAGAACCTGAGGATTGGAGACACAATTCGACCTCAACTTCTTCAAGCCATTGAAGAATCCAAGATTTCATTCATTGTTTTCTCTGAGAACTATGCAGATTCCACATGGTGTCTTGATGAACTTGATAAGATCCTTGAGTGTAAAAAGGAAAAGAACCAGCTTGTGTTTCCTATATTCTACAGAGTAGAGCCCTCAGATGTACGGCATCAGAAAAATAGATATGCACAAGCCATGGCTGCTCATGAAAATAGGTTTGGTTATGACTCTGAAAAGGTGCAAAAGTGGAAGGAAGCTTTGTCTCAAGCATCCAACATGAAAGGGTATCATCTAAAACAAGGGTATGAATTCAAGTTTATACAAGATATTGTGAGCAAGGCTGCCAGCAAAGTTTCTGCTAAACTATTGCCTATTGAGGAGCACATAGTTGGACTGCAAAGCAGAGTTGCAAGACTGAAGGCACTCGTAGATATTGAGTCTGATAAGAAAACTTTCATGTTGGGGATTGTTGGAAGTGGTGGAATTGGTAAAACAACAATTGCCAAGGTTTTGTATAACTCCATTTGCCACCATTTTGAAGGTGCTTGCTTTCTCTTTGATGTTAGGAAAGCTTCAAATCAAGACAAAGGCACAGTAGGCCTACAAAAGATGCTCTTGTCAAATATACTTGAGGAGGGTAAAATCAAGTTGGGAAGTGTTCATGAAGGAATATCTGTCATGAAAGAGAGGCTTTGCACAAAAAGAGTTCTTATAGTTCTTGATGATGTAGATAGAATGGATCAGTTACAAGAACTAGCAGGAGGATGTCCTTGGTTTGGACCTGGCAGCAGAATCATTATAACCACAAGGACTAAACATTTGCTGTCAAGACGTCATATCAGAAAGATTTATGAAATGGCAATGTTAAACAAAAGTGAATCTCTTTAG 1077 0.3928 MANPVDEHSATKSSNKHDVFLSFRGKDTRYTFTGYLYDALCRKGIKVFMDDENLRIGDTIRPQLLQAIEESKISFIVFSENYADSTWCLDELDKILECKKEKNQLVFPIFYRVEPSDVRHQKNRYAQAMAAHENRFGYDSEKVQKWKEALSQASNMKGYHLKQGYEFKFIQDIVSKAASKVSAKLLPIEEHIVGLQSRVARLKALVDIESDKKTFMLGIVGSGGIGKTTIAKVLYNSICHHFEGACFLFDVRKASNQDKGTVGLQKMLLSNILEEGKIKLGSVHEGISVMKERLCTKRVLIVLDDVDRMDQLQELAGGCPWFGPGSRIIITTRTKHLLSRRHIRKIYEMAMLNKSESL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62322g00003 358 Pfam NB-ARC domain 202 357 IPR002182 GO:0043531
Stsc62322g00003 358 Gene3D - 13 177 IPR035897 -
Stsc62322g00003 358 SMART till_3 16 156 IPR000157 GO:0007165
Stsc62322g00003 358 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 344 IPR044974 GO:0006952
Stsc62322g00003 358 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Stsc62322g00003 358 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 159 IPR035897 -
Stsc62322g00003 358 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Stsc62322g00003 358 Pfam TIR domain 16 180 IPR000157 GO:0007165
Stsc62322g00003 358 Gene3D - 178 345 IPR027417 -
Stsc62322g00003 358 PRINTS Disease resistance protein signature 216 231 - -
Stsc62322g00003 358 PRINTS Disease resistance protein signature 293 307 - -
Stsc62322g00003 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62322g00003 Stsc-Chr62322 3265 4978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62322g00003 2 358 WRKY Transcription Factor Family AT4G12020 29.363 1.92e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62322g00003 - - adu:107477228 511.146