Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62269g00002 ATGGAGAAGGATACTAGTTTGGAAATGCATCTCCCACCTGGATTCAGATTCCACCCTTCTGATGAAGAGCTTATTGTTCACTATCTAAGAAACAAAGTCACTTCATCACCACTTCCTGCTTCATTCATAGCAGAGATAGACCTTTACAAGTTCAATCCATGGGACCTTCCAAGCAAAGCTTTGTTTGGGGAAGAAGAGTGGTATTTCTTTACTCCAAGGGAGAGGAAGTACCCAAATGGAGTGAGACCAAATAGAGCAGCAGGTGCAGGTTACTGGAAAGCAACTGGAACTGACAAACCAATAATCACTTCATGTGGTATGAAGAGCATTGGAGTTAAGAAAGCTCTTGTCTTCTACAAGGGACGTCCTCCAAAGGGTTCCAAAACTGATTGGATCATGCATGAGTATAGGATGCATGATTCAATCCTCTCCAATCCCCTCAAAAGAACCTCCATGAGACTTGATGAGTGGGTGCTATGCCGGGTGAGACAGAAAACAGGTAGCCTAAGAAGCACTTTTGAAGACCCAAATGAACTGATTTATGAACCAAGAACCAAAAAGATTCATCAACAAATGAATGATGAGAACTTCAATAATAATCCTGAACCTTCAGTAGTGAAAACCTCAATTGTGAACAATGAATTTCCAATGTTACCTTATATTCTGGCTTCTAGGAGTAATTTGCCTAACTCCATTGGTGTGTCCTCAAGCACAGGCTTTGTCAGAAATTATGATATGAAAGAACATGGTTCATCAGTTCATGATGAAGATCATCACAACAACTTGAATGTAATAGGAGCACAGTTCTTATTAGCATCTGCAATGGAGATCAGCTTGTATAACAATAATAATAATCCTCTGAAGAGAAAATCCGTTGAAGAAGAAGAAAGCCATTTGGAATATGATCCCCCAAATAAGAAAATAAGCTTAGAACTCGTTGAAAATAAGTCAACAAGTGTTGATGTTGGCTACTTTGAACAGTGGAATTCATCAATCATACAACCTCCAGAGCTTAACAGCTTAGCCTTCATGGGATATTCATGA 1044 0.3946 MEKDTSLEMHLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKFNPWDLPSKALFGEEEWYFFTPRERKYPNGVRPNRAAGAGYWKATGTDKPIITSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRMHDSILSNPLKRTSMRLDEWVLCRVRQKTGSLRSTFEDPNELIYEPRTKKIHQQMNDENFNNNPEPSVVKTSIVNNEFPMLPYILASRSNLPNSIGVSSSTGFVRNYDMKEHGSSVHDEDHHNNLNVIGAQFLLASAMEISLYNNNNNPLKRKSVEEEESHLEYDPPNKKISLELVENKSTSVDVGYFEQWNSSIIQPPELNSLAFMGYS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62269g00002 347 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Stsc62269g00002 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 257 - -
Stsc62269g00002 347 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Stsc62269g00002 347 FunFam NAC domain-containing protein 72-like 20 170 - -
Stsc62269g00002 347 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Stsc62269g00002 347 Gene3D NAC domain 20 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62269g00002 Stsc-Chr62269 6394 8048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62269g00002 10 174 NAC Transcription Factor Family AT1G61110 68.786 6.57e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc62269g00002 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62269g00002 - - gmx:100788799 427.943