Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62269g00001 ATGAGCGTCATCGACCTCCTCACCAGAGTCGACTCCATTTGCAAGAAGTACGACAAGTACGACGTCGACAGGCAGAAGGACGCCAACATCTCCGGTGACGATGCCTTCGCCAGGCTCTATGCCGTCGTCGACGCCGACATCGAGGCTGCGCTTCAGAAAGCAGAACAAGCTTCGAAAGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACCAAGTCTAGGCTCCTGGAGGAGGTCCCCAAGTTGCAGAGGCTGGCTATAAAAAAGGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATCTGGTTCTTGCATTGCCAGAGAGGATCCAAGCTATCCCAGATGGGACCCCTGTGGCACCCAAGCAAACAGGAGGTTGGACAGCTTCTGCATCACGTCCTGAAATCAAATTTGATTCTGACGGGCGATTTGACGATGAGTACTTCCAACAAACCGAGGAGTCTAGTCGATTTAGGCAGGAGTATGAAATGCGTAGAATGAAACAGGATCAAGGTTTGGATGTGATAGCAGAAGGGTTGGATACCTTGAAAAACATGGCATCTGATATGAATGAGGAACTGGATAGACAAGTTCCTCTGATGGATGAGATCGATACTAAGGTTGACAAGGCATCTTCTGACCTTAAGAATACCAATGTTAGACTTAAAGACACAGTGATGCAGCTTCGGTCCAGTCGAAACTTCTGTATCGATATTGTTTTGTTGATTATAATTTTGGGGATAGCTGCCTATTTGTACAACGTGCTAAAGAAGTGA 798 0.4724 MSVIDLLTRVDSICKKYDKYDVDRQKDANISGDDAFARLYAVVDADIEAALQKAEQASKEKGKASAVAINAEIRRTKSRLLEEVPKLQRLAIKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPVAPKQTGGWTASASRPEIKFDSDGRFDDEYFQQTEESSRFRQEYEMRRMKQDQGLDVIAEGLDTLKNMASDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVMQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62269g00001 265 PANTHER SYNTAXIN 45 252 IPR045242 -
Stsc62269g00001 265 FunFam Putative syntaxin-71-like 170 231 - -
Stsc62269g00001 265 Pfam SNARE domain 207 256 IPR000727 -
Stsc62269g00001 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc62269g00001 265 SMART tSNARE_6 165 232 IPR000727 -
Stsc62269g00001 265 CDD SNARE_Qc 175 230 - -
Stsc62269g00001 265 MobiDBLite consensus disorder prediction 121 140 - -
Stsc62269g00001 265 Gene3D - 170 231 - -
Stsc62269g00001 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Stsc62269g00001 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Stsc62269g00001 265 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62269g00001 Stsc-Chr62269 2695 5756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62269g00001 1 264 SNARE and Associated Proteins AT3G09740 78.571 1.32e-157 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62269g00001 K08506 - gmx:100819272 465.307