Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62265g00001 ATGAATGTCTTCCAGTATGCAAATATTGATCCTCCATTCAACGAGGTTTTCAACGAAGCCATAGTCAACTACTCCACCATATTAATGAAGAAGATTCTTGATGTGTACAAAGGCTTTGACCAAATCAATAAACTAGTTGATGTTGGTGGCGGTCTTGGGGCCAATCTCAAATTGATCACTTCCAAATACCCTAATATCCAGAGTGTCAATTTTGATTTGCCTCATGTTATAGAAAACGCTCCCCTCTATGCTGGTGTGGAGCACATAGGTGGAAATATGTTTGAGAGCATTCCAAACGGGGATGCCATTTTTATTAAGAATGTACTTCATGATTGGGGTAACGAAGAATGCTTGAAGAAATTGAGGAATTGCCAGAAGGCTATACGGAAGGATGGGAAGGTGATTGTGGTGGATAAAGTTCTACCTGCAGTGGCAGAGCAAAGTGATGATGTTGCCAAGATGGCTTTGAGATCTGATGTTTTCATGATGCTTCAAACAACAAAAGGGAAAGAATGA 516 0.4031 MNVFQYANIDPPFNEVFNEAIVNYSTILMKKILDVYKGFDQINKLVDVGGGLGANLKLITSKYPNIQSVNFDLPHVIENAPLYAGVEHIGGNMFESIPNGDAIFIKNVLHDWGNEECLKKLRNCQKAIRKDGKVIVVDKVLPAVAEQSDDVAKMALRSDVFMMLQTTKGKE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62265g00001 171 Gene3D Vaccinia Virus protein VP39 14 171 IPR029063 -
Stsc62265g00001 171 PANTHER O-METHYLTRANSFERASE 5 171 IPR016461 GO:0008168
Stsc62265g00001 171 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 171 IPR029063 -
Stsc62265g00001 171 Gene3D - 2 32 IPR036388 -
Stsc62265g00001 171 Pfam O-methyltransferase domain 2 171 IPR001077 GO:0008171
Stsc62265g00001 171 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 171 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62265g00001 Stsc-Chr62265 572 1864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62265g00001 1 171 Monolignol Biosynthesis Gene Families AT5G54160 52.047 1.44e-64 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62265g00001 K13066 - ahf:112762943 244.973