Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62214g00002 ATGAACCAGTTGGCAATCGTGTATCTTGAGAGGAACTCCTTCCAAGGTCCCATTCCCGACTTGTCAAATTGCACCAACTTGCAATATCTGTTTCTTGGGGGCAATAAATTAACTGGTCAAGTTCCACCTTCTCTCATGAATCTCTCCATCTTGTGGGAGGTTTCATTGGAAAACAACTGGCTGCAGGGCCCTATGCCTCTCTTCAACAGAACTATTACCAAGAATGCAAGTGTTGAAGGAAATGGATTCTGTTTAGATCATCCTGGCCCTTGCGATCACACTGTCACAACTCTGCTACAAGTTGCTGAGGAATTCGGGTATCCACTTCTCTTGGCGCGCACGTGGCGAGGGAACAATCCCTGTAAAGGCTGGAATTTCATCACGTGCGATATACAGGGCAAGATCAGAACCCTCAATTTGACGAACCTGAATCTCAACGGAACCATCTCTTCAGCATTTGCCAATTTAACTGATTTGCGAGAACTCTATCTTAGTGGGAATGGGATTATACCCATATTCTCGCCAAACATGGACCTCAATACTGCAAATAATGCTTTTCTTCTTGGGCATCCTCCATCTAGAACTACACCTCTTTGGATTAAATTAGGTGCTAGTGCTTTAGGTGTTGTGGGAGCTATTCTAATCTTTGGGCTGATTGTTTTCAATCGTAAGAGATGTTTTAGGTTAGCGCAAAAGATTATGTTATGGAGAAAAAGAAAACATGTTGATGACCATGTTGAAAATCTCATCAAAAGCTATGGTGCCTTGAGTCTTAAGCGATATACATACAAAGAAGTGAAGAAGATGACAAACTCATTTAAAGAAAAATTAGGAGAAGGAGGATATGGCATTGTCTATAAAGCAAGCTTAGCTGATGGTCAACAGGTAGCAGTAAAAATACTGAAAGAGTCAAAGGGAAGTGTGGAAGAATTTGTAGATGAGGTCTTTATCATTAGTCGAACATCTCATGTGAACATTGTTTCACTCTTGGGATTTTGTTACCAAAAGAATAAAAGAGCATTAGTCTACGAATTCATGCCTAATGACTCTTTAGATAAGTTCTCACACAGAAAAGAGTCTTCTAATACTCTCTGTAAGTTGGATTGTAACATCTTATACCGAATCTCGATTGGTATAGCTCGAGGATTGGAGTACTTACATCGAGGATGTAACACAAGAATACTACATCTTGATATTAAACCTCAAAATATTCTTTTGGACGAATATTTTCGCCCAAAAATTGCAGATTTTGGATTGGCAAAGATATGCAAGAAGGATCAAAGTATTGTATCTATATTTGGTACAAGAGGAACTCCAGGATATATTGCACCAGAAGTATTCAGCCGAACATATGGTGAAGTTTCTCACAAATCTGATGTATATAGTTATGGCATGTTAATTCTAGAAATTATTGGAGGAAGGCAGAACTACAAAAGTGAAGCATCACAGAGTAGTGAAAGTTATTTTCCTGATTGGATCTATAAAGATCTTGAACAAGGCAATATTCCTACATGGTGTTTGCAACACAAAGAAGAAGAAAATGATATTATAATGAAAATGACTTTGGTGAGTTTATGGTGTATTCAACCAAATCCAGCAGATAGGCCTTTTATAAGTAAAGTAATAGACATGTTAGAAGGGCCTCTTGAGTCAGTTCCGTATCCTCCAAAACCAGTCTTATTTTCTCCTGAAAAGCTTATCTCACAATATTCGGATATATCTTATAGCAAAGAATGTGATACAAATTCAATAAAAACAGGGGAAATTGTCTCAAAAGGTAAATGTAGCTTTGATTTTGTTACTTTATTCTTTTCATGTCACACACTCTTGAAGACAAAAGATGTGTTCGGTGTTCCAAACACCAAAGGATAG 1872 0.3798 MNQLAIVYLERNSFQGPIPDLSNCTNLQYLFLGGNKLTGQVPPSLMNLSILWEVSLENNWLQGPMPLFNRTITKNASVEGNGFCLDHPGPCDHTVTTLLQVAEEFGYPLLLARTWRGNNPCKGWNFITCDIQGKIRTLNLTNLNLNGTISSAFANLTDLRELYLSGNGIIPIFSPNMDLNTANNAFLLGHPPSRTTPLWIKLGASALGVVGAILIFGLIVFNRKRCFRLAQKIMLWRKRKHVDDHVENLIKSYGALSLKRYTYKEVKKMTNSFKEKLGEGGYGIVYKASLADGQQVAVKILKESKGSVEEFVDEVFIISRTSHVNIVSLLGFCYQKNKRALVYEFMPNDSLDKFSHRKESSNTLCKLDCNILYRISIGIARGLEYLHRGCNTRILHLDIKPQNILLDEYFRPKIADFGLAKICKKDQSIVSIFGTRGTPGYIAPEVFSRTYGEVSHKSDVYSYGMLILEIIGGRQNYKSEASQSSESYFPDWIYKDLEQGNIPTWCLQHKEEENDIIMKMTLVSLWCIQPNPADRPFISKVIDMLEGPLESVPYPPKPVLFSPEKLISQYSDISYSKECDTNSIKTGEIVSKGKCSFDFVTLFFSCHTLLKTKDVFGVPNTKG 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62214g00002 623 Gene3D Phosphorylase Kinase; domain 1 244 345 - -
Stsc62214g00002 623 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Stsc62214g00002 623 FunFam PR5-like receptor kinase 346 555 - -
Stsc62214g00002 623 Gene3D Ribonuclease Inhibitor 93 193 IPR032675 -
Stsc62214g00002 623 ProSiteProfiles Protein kinase domain profile. 271 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc62214g00002 623 Pfam Protein kinase domain 273 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc62214g00002 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 245 567 IPR045874 GO:0004672
Stsc62214g00002 623 FunFam Leucine-rich repeat receptor-like kinase 93 190 - -
Stsc62214g00002 623 FunFam S-receptor-like serine/threonine-protein kinase 238 345 - -
Stsc62214g00002 623 SMART serkin_6 271 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc62214g00002 623 Gene3D Ribonuclease Inhibitor 1 91 IPR032675 -
Stsc62214g00002 623 SUPERFAMILY Protein kinase-like (PK-like) 248 545 IPR011009 -
Stsc62214g00002 623 Gene3D Transferase(Phosphotransferase) domain 1 346 552 - -
Stsc62214g00002 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 394 406 IPR008271 GO:0004672|GO:0006468
Stsc62214g00002 623 SUPERFAMILY L domain-like 4 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62214g00002 Stsc-Chr62214 6090 9510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62214g00002 258 567 Receptor kinase-like Gene Family AT5G38280 59.873 8.45e-122 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc62214g00002 Pkinase 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62214g00002 - K00924 aip:107635702 673.315