Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62203g00002 CAATCGATGGACATGTTAACGAGTGTAACACCACCGGGAATTAGTTTGATAAGGCGAATTGGTTCAAAAGGAAATAGTAATAGCCAATCTTTAACTACATCATTCAAGAGATCATCTCAAGAATGGAAGCAAGAGGATTCTTCTTTGGCTAAACCTCTTCTTGTCTCTGATAATCTCAAAGAAGTGGAGAATGCTGTTTCAGAACAACAACAACAACCTTCCACACAATCAAGCCTATTTCATCATGCCAAGTTTTCTCTTGATGACTTGCCACCACCACAACACCAATGTTCATTTGCACAGTCAGTTATTAATGGAACCAATATGTTATGTGGGATAGGACTTCTTACGATTCCATATGCAATAAAAGAAGGAGGATGGTTGAGCCTTACAATCCTTGTGTTATTTGCTGTCATTTGCTGTTATACTGGAATTTTATTGAAGAGGTGTTTGGAAAGCAACCCTGGACTCAAAACGTATCCAGATATCGGCCAAGCAGCCTTTGGAGTAGCCGGCCGCCTCGTCATCGCGGCAGCTTCTGTTGAGTTTATAACACTAATGAGTGATAACCTCTCGTCACTGTTTCCTAACGTCCACATCAAAGTTGGTGGGATAGTTTTGGAAACTCATGTGTTTTTTGCAATCACTGCAGCTCTTCTTGTTCTTCCTACAGTTTGGCTGCGAAATCTAAGCCTTCTTTCTTTTATCTCAGCTGGAGGAATATTTGCAACAATAATGGTGACATTATGCTTGTTTTGGGTTGGGTTGTTTGATAGAGTTGGATCAACACCAGGAGGAAAACTTTTAGACCTGGAAAACATTTCTGTATCAGTTGGTCTATATGGTTTTGGCTTTGCTGGCCATGCTGTTTTCCCAAATGTCTACTCTTCTATGCAGGATCCATCCAGATTCCCATCTGTTCTCTATCTTAGTTTTACCTTTTGTCTGTTTATGTACATGAGTGTGGGCGCAGTTGGGTATTTAACCTTTGGCGACTCAGTTGAGTCTCAATTTACCTTAAACATGCCCAAAGAGTTATATTCATCAAAGATTGCAACCTGGACCACTGTTGTTACACCATTGGCGAAATATGCACTAACGATATTACCCATTGCGTTGAGCATAGAGGAACTTATCCCTAAGAACAAGCTAAGATGCCACTCCACAGCCATTGTTATCAGAACATGTTTAGTGATTTCAAGTTTGATTGTGGCCCTCTCTATTCCTTATTTCGGTGCTTTGATGGCGCTAATCGGTGCTTTTATGTCAATGTTTGTTGCTCTTATTTATCCTTGTGCGTGTTATCTAAAGCTACACAGTGGTAGATTATCAAAACTGGAGATAACAAATTGTGTATTAATTATTATCGTGGCGGTGATAAGCTCTATCGTTGGAACATATTCTGCTCTTTTAAGAATAGCTAATGATGGGGACTAA 1437 0.3994 QSMDMLTSVTPPGISLIRRIGSKGNSNSQSLTTSFKRSSQEWKQEDSSLAKPLLVSDNLKEVENAVSEQQQQPSTQSSLFHHAKFSLDDLPPPQHQCSFAQSVINGTNMLCGIGLLTIPYAIKEGGWLSLTILVLFAVICCYTGILLKRCLESNPGLKTYPDIGQAAFGVAGRLVIAAASVEFITLMSDNLSSLFPNVHIKVGGIVLETHVFFAITAALLVLPTVWLRNLSLLSFISAGGIFATIMVTLCLFWVGLFDRVGSTPGGKLLDLENISVSVGLYGFGFAGHAVFPNVYSSMQDPSRFPSVLYLSFTFCLFMYMSVGAVGYLTFGDSVESQFTLNMPKELYSSKIATWTTVVTPLAKYALTILPIALSIEELIPKNKLRCHSTAIVIRTCLVISSLIVALSIPYFGALMALIGAFMSMFVALIYPCACYLKLHSGRLSKLEITNCVLIIIVAVISSIVGTYSALLRIANDGD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62203g00002 478 FunFam Amino acid transporter AVT1A 95 476 - -
Stsc62203g00002 478 Pfam Transmembrane amino acid transporter protein 96 467 IPR013057 -
Stsc62203g00002 478 PANTHER AMINO ACID TRANSPORTER 88 467 - -
Stsc62203g00002 478 MobiDBLite consensus disorder prediction 20 38 - -
Stsc62203g00002 478 MobiDBLite consensus disorder prediction 18 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62203g00002 Stsc-Chr62203 7129 11438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62203g00002 1 476 Amino Acid or Auxin Permease AAAP Family AT5G02180 51.020 2.28e-175 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62203g00002 K15015 - qsu:112025453 556.984