Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62190g00001 ATGGAGCAAGCAATTGTGGACAACATAATAAACCGATTGCTAGAAGTTCGGGGGCGGCCAGGGAAGCATGTGCAGCTCTCAGAATCGGAGATCAAGCAGCTATGTACCGCTTCTAGAGAGATTTTCTTGCAACAGCCCAATTTGCTGGAGCTTGAAGCCCCCATTAAGATTTGTGGTGATATACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTTCCACCTGAGGCCAACTACTTATTTTTGGGTGATTATGTAGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCCGAGAACTTTTTCCTTTTGAGGGGGAACCATGAATGCGCTTCAATAAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGATTCAATGTAAGATTATGGAGAACATTTACAGAATCCTTCAATTGCTTGCCTGTGGCAGCTCTCATTGATGAAAAAATTTTGTGCATGCATGGGGGACTCTCTCCTGACTTAAACAATTTGGATCAGATTAAAAATCTACAGCGACCAACGGATGTACCAGATACAGGCTTGTTATGTGATCTTCTATGGTCAGATCCAAGCAAAGAAGTCCAAGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGTAGATAAAGTCTCCGAGTTTCTCCAAAAACATGATTTAGATCTTATTTGTCGTGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGACAACTTGTAACAATATTTTCGGCACCTAATTATTGTGGGGAATTTGATAATGCTGGTGCTATGATGAGTGTTGATGAAACTCTAATGTGCTCGTTCCAAATATTAAAGCCCCGCTGA 888 0.4032 MEQAIVDNIINRLLEVRGRPGKHVQLSESEIKQLCTASREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWRTFTESFNCLPVAALIDEKILCMHGGLSPDLNNLDQIKNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGVDKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62190g00001 295 SMART pp2a_7 26 294 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Stsc62190g00001 295 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Stsc62190g00001 295 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Stsc62190g00001 295 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Stsc62190g00001 295 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Stsc62190g00001 295 FunFam Serine/threonine-protein phosphatase 52 295 - -
Stsc62190g00001 295 SUPERFAMILY Metallo-dependent phosphatases 18 294 IPR029052 -
Stsc62190g00001 295 CDD MPP_PP1_PPKL 6 294 - -
Stsc62190g00001 295 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 294 - -
Stsc62190g00001 295 Gene3D - 1 295 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62190g00001 Stsc-Chr62190 1252 6940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62190g00001 55 242 Calmodulin-binding Proteins AT5G63870 32.735 3.86e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62190g00001 K06269 - gmx:100799218 588.571