Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc620g00003 ATGGGTAAAAGAAAAGGTTCACCTCTAAATCATGAGCAAGTTATAGGGTCAGAACCCGACAACATCAATGAATCTTCGAATGGAAAAGCCTCTATAAAGGGTTTTAACTTCATTGATGAAAGGATAATGAATGGAAATTGGGTTAATGAACCTCATGCTGATGTCATCCGGAGATTCTTTCGCCTTTTGGCTATCTGTCATACGGCTATACCAGAAATGGATGAAGACACTGGAAATGTCTCGTATGAGGCTGAATCGCCTGATGAAGCAGCATTTGTGATTGCAGCCAGAGAAATTGGTTTCGAATTCTGTAAAAGGACTCAGACTAGCGTATCAACTTTTGAGTTGGATCCTGTTTCTGCCAAAAAAGTTGAAAGGGTGTACAAGCTTCTCAATGTGTTGGAATTTAATAGCTCGAGGAAGAGGATGTCAGTGATAGTGGAGGATGAAGAAGGAAAAATTTTTCTATTATGCAAAGGCGCCGATAGTGTCATGTTTGAAAGGCTAGCCAAGAATGGGAGGGAGTTCCAAGATAAGACCATGGAGCATGTTCATGATTATGCCGATGCAGGTCTAAGGACCTTGATATTAGCCTATCGGGAACTCGATGCGGAAGAATACAAGGAGTTTCGCGACAAATTCTCTAAGGCTAAGAATTTGGTTTGTGCTGATCAGGAGAGACAGATTGAGAAAATATCAAACAAGATTGAGAGGAATCTAATTCTTCTTGGTGCCACTGCTGTAGAGGACAAACTCCAAAACGGGGTTCCCGATTGCATTGACAAGCTTGCCCAAGCAGGAATCAAGATTTGGGTTTTGACCGGGGATAAAATGGAGACTGCAATCAATATAGGTTTTGCTTGTAGTTTGTTAAGACAAGGAATGAAGCAGATTATAATTCATTTGGAGAGTCCAGAAATTAAAGCACTGGAAAAGGATGGAGACAAGCTTGCTATAATCAAGGCATCGAGGCAAAGTGTCCTCCAACAGATATCCGAAGGTGCTGCACAAGTGACAGCATACAGAGGAAGTTCTCAGCAGGCGTTTGCTTTGATCATTGACGGAAAATCACTCGTCTATGCTCTAGATGATAACATCAAGAACATGTTTCTAGAGCTTGCGATTCGCTGTGCATCTGTTATCTGCTGTCGCTCGTCACCAAAGCAGAAGGCGCTGGTTACTAGATTGGTCAAATCTGGAACTCGGAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATATAGGGGTTGGAATTAGTGGCGTCGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCGCAATTCCGATATTTGGACCGATTACTTCTTGTGCACGGACATTGGTGTTACCGGAGGATCTCGTCTATGATATGCTATTTTTTCTACAAGAACATCACATTTGGATTCACATTGTTCTTATATGAGGTGTATGCATCCTTCTCCGGAGAACCTGCATACAATGATTGGCTTTTATCTATCTATAATGTCTTCTTTTCATCCCTTCCCGTGATTGCTCTCGGGGTGTTCGACCAGGATGTATCGGCTCGGTACTGCCTAAAGTTTCCGTTGCTATATCAAGAAGGAGTGCAAAATGTCCTCTTTAGCTGGCGGCGAATACTCGCATGGATGCTTAACGGATTCATTAGCGCCATACTAATTTTCTTCTTCTGCACGAAAGCCATGGAACTTCAGGCCTTCGACTCGGAGGGAAGAACCGCCGGAAGAGATATACTCGGAGCAACCATGTACACTTGCGTGGTCTGGGTAGTAAATTTGCAGATAGCTTTAGCTATAAGTTACTTCACCATGATCCAACACATTTTCATCTGGGGTTCGATCGCTTTCTGGTACATCTTCCTTCTGGCATACGGTGCGATGTCCCCGCATTTTTCGACGAATGCCTATGAAGTCTTCGCCGAGACTCTTGCGCCTTCGCCCATGTACTGGCTTGTCACATTCTTTGTGGTGATCTCAACACTCATACCATATTTTTCATACTCAGCAATTCAGATGAGGTTCTTTCCCATGTTTCATGAAATTGTCCAATGGATAAGGTATGAAGGGAAGACGAAGGATCCCGAATATTGTCACATGGTGCGGCAGAGATCGTTGCGGCCAACAACCGTCGGATCAACGGCACGGCTGGCAGCCATGGCTAACGACAGGCGAGACAGAACAGCGATTAACCGTAGATAA 2229 0.4365 MGKRKGSPLNHEQVIGSEPDNINESSNGKASIKGFNFIDERIMNGNWVNEPHADVIRRFFRLLAICHTAIPEMDEDTGNVSYEAESPDEAAFVIAAREIGFEFCKRTQTSVSTFELDPVSAKKVERVYKLLNVLEFNSSRKRMSVIVEDEEGKIFLLCKGADSVMFERLAKNGREFQDKTMEHVHDYADAGLRTLILAYRELDAEEYKEFRDKFSKAKNLVCADQERQIEKISNKIERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLESPEIKALEKDGDKLAIIKASRQSVLQQISEGAAQVTAYRGSSQQAFALIIDGKSLVYALDDNIKNMFLELAIRCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLDRLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGEPAYNDWLLSIYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILAWMLNGFISAILIFFFCTKAMELQAFDSEGRTAGRDILGATMYTCVVWVVNLQIALAISYFTMIQHIFIWGSIAFWYIFLLAYGAMSPHFSTNAYEVFAETLAPSPMYWLVTFFVVISTLIPYFSYSAIQMRFFPMFHEIVQWIRYEGKTKDPEYCHMVRQRSLRPTTVGSTARLAAMANDRRDRTAINRR 742
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc620g00003 742 Gene3D - 244 448 IPR023214 -
Stsc620g00003 742 NCBIfam phospholipid-translocating P-type ATPase 26 693 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc620g00003 742 FunFam Phospholipid-transporting ATPase 85 243 - -
Stsc620g00003 742 MobiDBLite consensus disorder prediction 1 27 - -
Stsc620g00003 742 SUPERFAMILY HAD-like 236 456 IPR036412 -
Stsc620g00003 742 SUPERFAMILY Calcium ATPase, transmembrane domain M 457 686 IPR023298 -
Stsc620g00003 742 FunFam Phospholipid-transporting ATPase 243 448 - -
Stsc620g00003 742 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 34 206 IPR023299 GO:0000166
Stsc620g00003 742 NCBIfam HAD-IC family P-type ATPase 379 490 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc620g00003 742 Pfam Cation transport ATPase (P-type) 76 169 - -
Stsc620g00003 742 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 697 - -
Stsc620g00003 742 Pfam Phospholipid-translocating P-type ATPase C-terminal 436 686 IPR032630 -
Stsc620g00003 742 Gene3D - 108 243 IPR023299 GO:0000166
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc620g00003 Stsc-Chr620 23269 29042 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc620g00003 1 734 Primary Pumps ATPases AT1G68710 70.980 0.0 1136
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc620g00003 K01530 - gmx:100781421 1274.23