LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc620g00003	ATGGGTAAAAGAAAAGGTTCACCTCTAAATCATGAGCAAGTTATAGGGTCAGAACCCGACAACATCAATGAATCTTCGAATGGAAAAGCCTCTATAAAGGGTTTTAACTTCATTGATGAAAGGATAATGAATGGAAATTGGGTTAATGAACCTCATGCTGATGTCATCCGGAGATTCTTTCGCCTTTTGGCTATCTGTCATACGGCTATACCAGAAATGGATGAAGACACTGGAAATGTCTCGTATGAGGCTGAATCGCCTGATGAAGCAGCATTTGTGATTGCAGCCAGAGAAATTGGTTTCGAATTCTGTAAAAGGACTCAGACTAGCGTATCAACTTTTGAGTTGGATCCTGTTTCTGCCAAAAAAGTTGAAAGGGTGTACAAGCTTCTCAATGTGTTGGAATTTAATAGCTCGAGGAAGAGGATGTCAGTGATAGTGGAGGATGAAGAAGGAAAAATTTTTCTATTATGCAAAGGCGCCGATAGTGTCATGTTTGAAAGGCTAGCCAAGAATGGGAGGGAGTTCCAAGATAAGACCATGGAGCATGTTCATGATTATGCCGATGCAGGTCTAAGGACCTTGATATTAGCCTATCGGGAACTCGATGCGGAAGAATACAAGGAGTTTCGCGACAAATTCTCTAAGGCTAAGAATTTGGTTTGTGCTGATCAGGAGAGACAGATTGAGAAAATATCAAACAAGATTGAGAGGAATCTAATTCTTCTTGGTGCCACTGCTGTAGAGGACAAACTCCAAAACGGGGTTCCCGATTGCATTGACAAGCTTGCCCAAGCAGGAATCAAGATTTGGGTTTTGACCGGGGATAAAATGGAGACTGCAATCAATATAGGTTTTGCTTGTAGTTTGTTAAGACAAGGAATGAAGCAGATTATAATTCATTTGGAGAGTCCAGAAATTAAAGCACTGGAAAAGGATGGAGACAAGCTTGCTATAATCAAGGCATCGAGGCAAAGTGTCCTCCAACAGATATCCGAAGGTGCTGCACAAGTGACAGCATACAGAGGAAGTTCTCAGCAGGCGTTTGCTTTGATCATTGACGGAAAATCACTCGTCTATGCTCTAGATGATAACATCAAGAACATGTTTCTAGAGCTTGCGATTCGCTGTGCATCTGTTATCTGCTGTCGCTCGTCACCAAAGCAGAAGGCGCTGGTTACTAGATTGGTCAAATCTGGAACTCGGAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATATAGGGGTTGGAATTAGTGGCGTCGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCGCAATTCCGATATTTGGACCGATTACTTCTTGTGCACGGACATTGGTGTTACCGGAGGATCTCGTCTATGATATGCTATTTTTTCTACAAGAACATCACATTTGGATTCACATTGTTCTTATATGAGGTGTATGCATCCTTCTCCGGAGAACCTGCATACAATGATTGGCTTTTATCTATCTATAATGTCTTCTTTTCATCCCTTCCCGTGATTGCTCTCGGGGTGTTCGACCAGGATGTATCGGCTCGGTACTGCCTAAAGTTTCCGTTGCTATATCAAGAAGGAGTGCAAAATGTCCTCTTTAGCTGGCGGCGAATACTCGCATGGATGCTTAACGGATTCATTAGCGCCATACTAATTTTCTTCTTCTGCACGAAAGCCATGGAACTTCAGGCCTTCGACTCGGAGGGAAGAACCGCCGGAAGAGATATACTCGGAGCAACCATGTACACTTGCGTGGTCTGGGTAGTAAATTTGCAGATAGCTTTAGCTATAAGTTACTTCACCATGATCCAACACATTTTCATCTGGGGTTCGATCGCTTTCTGGTACATCTTCCTTCTGGCATACGGTGCGATGTCCCCGCATTTTTCGACGAATGCCTATGAAGTCTTCGCCGAGACTCTTGCGCCTTCGCCCATGTACTGGCTTGTCACATTCTTTGTGGTGATCTCAACACTCATACCATATTTTTCATACTCAGCAATTCAGATGAGGTTCTTTCCCATGTTTCATGAAATTGTCCAATGGATAAGGTATGAAGGGAAGACGAAGGATCCCGAATATTGTCACATGGTGCGGCAGAGATCGTTGCGGCCAACAACCGTCGGATCAACGGCACGGCTGGCAGCCATGGCTAACGACAGGCGAGACAGAACAGCGATTAACCGTAGATAA	2229	0.4365	MGKRKGSPLNHEQVIGSEPDNINESSNGKASIKGFNFIDERIMNGNWVNEPHADVIRRFFRLLAICHTAIPEMDEDTGNVSYEAESPDEAAFVIAAREIGFEFCKRTQTSVSTFELDPVSAKKVERVYKLLNVLEFNSSRKRMSVIVEDEEGKIFLLCKGADSVMFERLAKNGREFQDKTMEHVHDYADAGLRTLILAYRELDAEEYKEFRDKFSKAKNLVCADQERQIEKISNKIERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLESPEIKALEKDGDKLAIIKASRQSVLQQISEGAAQVTAYRGSSQQAFALIIDGKSLVYALDDNIKNMFLELAIRCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLDRLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGEPAYNDWLLSIYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILAWMLNGFISAILIFFFCTKAMELQAFDSEGRTAGRDILGATMYTCVVWVVNLQIALAISYFTMIQHIFIWGSIAFWYIFLLAYGAMSPHFSTNAYEVFAETLAPSPMYWLVTFFVVISTLIPYFSYSAIQMRFFPMFHEIVQWIRYEGKTKDPEYCHMVRQRSLRPTTVGSTARLAAMANDRRDRTAINRR	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc620g00003	742	Gene3D	-	244	448	IPR023214	-
	Stsc620g00003	742	NCBIfam	phospholipid-translocating P-type ATPase	26	693	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326
	Stsc620g00003	742	FunFam	Phospholipid-transporting ATPase	85	243	-	-
	Stsc620g00003	742	MobiDBLite	consensus disorder prediction	1	27	-	-
	Stsc620g00003	742	SUPERFAMILY	HAD-like	236	456	IPR036412	-
	Stsc620g00003	742	SUPERFAMILY	Calcium ATPase, transmembrane domain M	457	686	IPR023298	-
	Stsc620g00003	742	FunFam	Phospholipid-transporting ATPase	243	448	-	-
	Stsc620g00003	742	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	34	206	IPR023299	GO:0000166
	Stsc620g00003	742	NCBIfam	HAD-IC family P-type ATPase	379	490	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Stsc620g00003	742	Pfam	Cation transport ATPase (P-type)	76	169	-	-
	Stsc620g00003	742	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	29	697	-	-
	Stsc620g00003	742	Pfam	Phospholipid-translocating P-type ATPase C-terminal	436	686	IPR032630	-
	Stsc620g00003	742	Gene3D	-	108	243	IPR023299	GO:0000166

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc620g00003	Stsc-Chr620	23269	29042	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc620g00003	1	734	Primary Pumps ATPases	AT1G68710	70.980	0.0	1136

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc620g00003	K01530		-	gmx:100781421	1274.23