Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62082g00001 ATGATGAGTAGTGTTATGTATAGTCCTGTTCTCAAATACCCAGATGAAGTTCTAAGAAAAAACCATGAAATGATTTCAAATATTAATAACCATCATCAACAACAACAGCAGCAAAATTCTAGATTATTGAGGTACCGTTCTGCTCCAAGTTCATTCTTGGAAAGCCTTGTTGACAACAACAATGGTGGGGGTAATGTCAATGAGGAATCTTTGAGAAATGAGGACCCTTCATTGGGCCATGGTTATTACCATCATATTATTCCATCCACAAGCTCATCATTATCATCAGAGACTATGCTTTCCAAGCTGATACAATCCAACAATGGATGGAGCCGCCGCGATTGGGAAGAGTATGGAGGAGGCAACAACAAACCTACTGTGGTGAAGGAAGAAAATGGGAATTCTGGTTACTCTTATTGGTCTCACCAAATTCAAAGTTTACCAGAAAATAATAATAGTAATGGTTCTTCTGGAAATGGTTTTGATGGCACTTTTGGTGTAGTGAAGTCTGTAAATTCAGATCACTCTGCTCAATCTGAAATGGGTGTTAGGAGTTGCTCCAATCTCATCAGGCAAAAGAGTTCTCCAGCTGGATTTTTCTCCACTGAAAATGCATTGAGAGAGGCTGAGAGCTTTAGAACAATTGATGTCTCAAACGAACAACCAACTGCATCAAGTAGTGCATTACATGCACATGGTGCTCTTTCTTTCTCACCGAATAGGCCATCCTCTTGCTTGAAACGGATGCCACAGATTTCCGAATATGAAAACGAAATCCATGAAGGAACAACTGATCAAAGCATAAGAAACTTAGTAAATGACAATGGCAGCTTTAAGTGCTATGTGCCTAGCTTCATCGGTGAATTTTGGAGCGCTTCTGCATTCAATTCCCAAAAAGCGGCCAGTGCAGATGAAATCATGTTTTCTGCTTCAAATGCTTTGGAATCTAAGGACTCGAACTTCTGCTCACCAAATCATGATTTGACTCATTATCTGAGTCTCCCTAGCTCTTCTACTAAGATGGGATCAATGGAGAAGTTTCTTCAACTCCAAGGCACTGTTCCTTGCAAAATTCGAGCAAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTGCGAAGAACACGAATTAGTGAAAGAATCAAGAAATTGCAAAGCCTTTTCCCGAAATCAGACAAGCAAACAAGCACAGCAGAGATGTTGGATTTGACTGTTGAGCATATTAAAGAACTACAAGAACAAGTTAAGATGCTCACAAATGTTAGGTCGAAGTGCAGATGTTCAAATACTCAGAAGCAATATTCTTAA 1317 0.4002 MMSSVMYSPVLKYPDEVLRKNHEMISNINNHHQQQQQQNSRLLRYRSAPSSFLESLVDNNNGGGNVNEESLRNEDPSLGHGYYHHIIPSTSSSLSSETMLSKLIQSNNGWSRRDWEEYGGGNNKPTVVKEENGNSGYSYWSHQIQSLPENNNSNGSSGNGFDGTFGVVKSVNSDHSAQSEMGVRSCSNLIRQKSSPAGFFSTENALREAESFRTIDVSNEQPTASSSALHAHGALSFSPNRPSSCLKRMPQISEYENEIHEGTTDQSIRNLVNDNGSFKCYVPSFIGEFWSASAFNSQKAASADEIMFSASNALESKDSNFCSPNHDLTHYLSLPSSSTKMGSMEKFLQLQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQSLFPKSDKQTSTAEMLDLTVEHIKELQEQVKMLTNVRSKCRCSNTQKQYS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62082g00001 438 Gene3D - 366 437 IPR036638 GO:0046983
Stsc62082g00001 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983
Stsc62082g00001 438 SMART finulus 370 420 IPR011598 GO:0046983
Stsc62082g00001 438 FunFam Transcription factor bHLH130 family 365 434 - -
Stsc62082g00001 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 431 IPR036638 GO:0046983
Stsc62082g00001 438 CDD bHLH_AtbHLH_like 369 421 IPR045239 -
Stsc62082g00001 438 Pfam Helix-loop-helix DNA-binding domain 369 415 IPR011598 GO:0046983
Stsc62082g00001 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62082g00001 Stsc-Chr62082 2362 6825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62082g00001 32 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 31.429 9.34e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc62082g00001 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62082g00001 - - adu:107462676 577.015