Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62056g00001 ATGATTCCAAGAAAGTTCGTGAGGAAATACGGGGAATGCCTATCTAACAAAGTAGTTCTCAAGGTTCCAAATGGGACAGAATGGAAAGTGTATTTGGAGAAACATGATGATGAAACTTGGTTCCAAAATGGTTGGAAAGAGTTTGTGGAGCATCACTCTCTACAGCATGGGGATCTGTTGGTTTTTAGATTTGAAGGAACCTCTCATTTTAATGTGACTATATTTGATATGAGTGCCACGGAAATAGACTACCCTGTCAAGAATAAATATGGTAAAAGACAAAGGCCCAACACTAGTGAGGAACATCTTCTTGCTTGTAAAAATAAAAGAGATGAAGGTTTCGAAAATTCTGGAACTATAGAAGTTTCAAAAGGTACTTTCTTCACGACTACGATCAAAGCAATCAACCAAGGATCCTGCGCTCTGTGGATACCGAAGGGCTCCTTAGAAGGTTACATCAAACCTGGCAAACAAAATGTTACATTGTTGGTTGGAGAAAGATCTTCGAAGCTTAGGTTAATCCATTACCAAAAATATTCTAGAAGTTGCATCATAGGTTGGACGAAATTTGCAAGAGAAGCTGGTTTCAATGTAGGGGATACGTGTTCCTTTAAGTTATTGGCTAGCGATTGTGAAGAAATAGCCATGAAGGTTTCCATTTGTAAGCGGTCCACCATCCACTAA 684 0.3904 MIPRKFVRKYGECLSNKVVLKVPNGTEWKVYLEKHDDETWFQNGWKEFVEHHSLQHGDLLVFRFEGTSHFNVTIFDMSATEIDYPVKNKYGKRQRPNTSEEHLLACKNKRDEGFENSGTIEVSKGTFFTTTIKAINQGSCALWIPKGSLEGYIKPGKQNVTLLVGERSSKLRLIHYQKYSRSCIIGWTKFAREAGFNVGDTCSFKLLASDCEEIAMKVSICKRSTIH 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62056g00001 227 Gene3D - 106 225 IPR015300 -
Stsc62056g00001 227 SMART B3_2 127 224 IPR003340 GO:0003677
Stsc62056g00001 227 SMART B3_2 1 78 IPR003340 GO:0003677
Stsc62056g00001 227 PANTHER B3 DOMAIN-CONTAINING 1 211 - -
Stsc62056g00001 227 SUPERFAMILY DNA-binding pseudobarrel domain 125 210 IPR015300 -
Stsc62056g00001 227 Gene3D - 1 79 IPR015300 -
Stsc62056g00001 227 CDD B3_DNA 127 222 IPR003340 GO:0003677
Stsc62056g00001 227 Pfam B3 DNA binding domain 127 223 IPR003340 GO:0003677
Stsc62056g00001 227 Pfam B3 DNA binding domain 1 76 IPR003340 GO:0003677
Stsc62056g00001 227 CDD B3_DNA 1 76 IPR003340 GO:0003677
Stsc62056g00001 227 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Stsc62056g00001 227 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62056g00001 Stsc-Chr62056 11400 13002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62056g00001 2 84 B3 DNA Binding Superfamily AT3G18990 50.602 1.92e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc62056g00001 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62056g00001 - - aprc:113849508 204.912