Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62021g00003 ATGGCAATGGCCATGGCCTCACCCTCAATGTTATCAACACCATGTTCTTTCAGTTTCCCTTCCATCACTAACAATTACAATCCTATCCCTTCTAGAAGACTAGCTCTCTTTCACCTTGCTTCTTCTGCTATTGCTATTCCACAGTCCCAATCTGTGTTATCTGGTTTAAAAGGATCAGAATTGTTTAGAGTAGAAGAGGCTAATGCAGCAGAGAATCTAACCCAAGCAGAGCAAAACTTGTTTGAATGGATCAAAAATGACAACAGAAGATTCTTACATGTTGTATACCGTGTTGGGGACTTAGATAAGACTATCAAGTTTTACACTGAGTGCCTTGGCATGAAGCTGTTGAGAAAACGAGATATACCGGAAGAAAGATACAGTAATGCTTTTCTTGGATATGGCCCTGAAGATTCCAATTTTACAGTTGAGCTTACTTACAGTTATGGAGTGGATAAGTATGACATTGGAAATGGGTTTGGTCATTTTGGTGTTGTAGTTGAAGATGCTGCAAAAGCAGTTGATCTAATAAAAGTGAAAGGGGGAAAGGTTACCAAGGAACCTGAAGATGGAAGCACAGTAACTGCTTTCATCCAAGATCCTGATGGTTATGAATTTGAGCTCTTGGAAAGAGGACTTACTTTCGAACCGCTACGCCAAGTGTCACTTCGCGTAGGTGATCTTGACCGCGCCATAGGATTCTATCAGAAAGCTATTGGCATGCAACTTCTTCATAGGAAAGACAATCCTGAGCACAAGAATACAGTTGCCACAATGAGCTATGGTCCTGAAGATAAGAACACAGTTCTAGAACTTACATATAACTATGGTGTCACTAATTATGACAAAGGAAATGGCTATGGACAGATTGCAATAGGCACAAATAATGTGTACAAGAGTGCAGAAGCAATCCAACTGTGTGGAGGCAAGATTATCCGTGAACCCGGGCCGCTGCCAGGTATCAACACCAAGATAGCAGTTTGCTTGGACCCTGATGGTTGGAAATTGGCTTTTGTTGATAATGCTGATTTCCTGAAGGAATTAGAGTAA 1050 0.4114 MAMAMASPSMLSTPCSFSFPSITNNYNPIPSRRLALFHLASSAIAIPQSQSVLSGLKGSELFRVEEANAAENLTQAEQNLFEWIKNDNRRFLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYSNAFLGYGPEDSNFTVELTYSYGVDKYDIGNGFGHFGVVVEDAAKAVDLIKVKGGKVTKEPEDGSTVTAFIQDPDGYEFELLERGLTFEPLRQVSLRVGDLDRAIGFYQKAIGMQLLHRKDNPEHKNTVATMSYGPEDKNTVLELTYNYGVTNYDKGNGYGQIAIGTNNVYKSAEAIQLCGGKIIREPGPLPGINTKIAVCLDPDGWKLAFVDNADFLKELE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62021g00003 349 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 89 215 IPR029068 -
Stsc62021g00003 349 Gene3D - 63 212 IPR029068 -
Stsc62021g00003 349 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 217 341 IPR037523 -
Stsc62021g00003 349 NCBIfam lactoylglutathione lyase 91 211 IPR004361 GO:0004462|GO:0046872
Stsc62021g00003 349 PANTHER LACTOYLGLUTATHIONE LYASE 72 349 - -
Stsc62021g00003 349 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 90 211 IPR037523 -
Stsc62021g00003 349 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 91 208 IPR004360 -
Stsc62021g00003 349 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 220 338 IPR004360 -
Stsc62021g00003 349 ProSitePatterns Glyoxalase I signature 1. 93 114 IPR018146 GO:0004462|GO:0046872
Stsc62021g00003 349 Gene3D - 215 349 IPR029068 -
Stsc62021g00003 349 CDD GlxI_Ni 92 209 - -
Stsc62021g00003 349 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 220 341 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62021g00003 Stsc-Chr62021 6643 8698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62021g00003 218 340 Calmodulin-binding Proteins AT1G08110 27.027 6.14e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62021g00003 K01759 - gmx:100810908 523.472