Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62021g00001 ATGACGAAAATAGCTGTAGGAACCACCCGAGAGGCAACCCAACCCGATTGCATTCGGGCCCTCGTTGTGGAGTTCATAGCCACCTTCCTCTTTGTCTTCACCGGCGTTGCTTCCGCCATGGCCGCTGAAAAGCTTAGTAGTGGAGATGCAATATTACGCTTGGTTGCTGTGGCCGTGGCAACTGCATTTGTGGTGGCGGTAATGATTTCAGCCGGTCACATCTCCGGCGGTCACCTGAACCCTGCCGTGACGCTTGGGCTCCTCGTGGGCGGGCACATCACGGTGGTCCGATCGGTCCTTTATTGGATAGATCAGTTGGTAGCATCTGCAGCTGCTTCTTACCTTCTTTGCTACCTTTCCGGGGGAATGGCAATTCCAGTTCATACTCTAGCAAGTGGAGTTGGGTATAGTCAAGGAGTAATTTGGGAGATTGTGTTGACTTTCTCATTGTTATTTACGGTCTATGGAACTATGGTTGACCCCAAAAAAGGAGTAGCTACTGGGCATGGGCCCACAATAATTGGGTTTGTAGTTGGGGCCAATATCCTCGCTGGTGGGGCCTTCTCTGCGGCCTCAATGAACCCAGCAAGGTCTTTTGGGCCCGCCTTGGTCATGGGTAACTGGACCGGTCAATGGGTTTATTGGGTTGGGCCTCTCATTGGTGGAGGCCTTGCCGGATTATCTATGAACATTTTTTCATTGACCGTACCCATAATCTACTCTATCCTCATGAAGAAAATTAATAAGGAACTTGTTTTTTACTCATTCTATGCTGTATTTTATTTCGGTAATGCTAGACTTATTTTGTCCAATCAAATCTAA 822 0.4854 MTKIAVGTTREATQPDCIRALVVEFIATFLFVFTGVASAMAAEKLSSGDAILRLVAVAVATAFVVAVMISAGHISGGHLNPAVTLGLLVGGHITVVRSVLYWIDQLVASAAASYLLCYLSGGMAIPVHTLASGVGYSQGVIWEIVLTFSLLFTVYGTMVDPKKGVATGHGPTIIGFVVGANILAGGAFSAASMNPARSFGPALVMGNWTGQWVYWVGPLIGGGLAGLSMNIFSLTVPIIYSILMKKINKELVFYSFYAVFYFGNARLILSNQI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62021g00001 273 FunFam Probable aquaporin TIP1-1 2 240 - -
Stsc62021g00001 273 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 SUPERFAMILY Aquaporin-like 11 233 IPR023271 -
Stsc62021g00001 273 PANTHER AQUAPORIN-8 4 232 IPR034294 -
Stsc62021g00001 273 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Stsc62021g00001 273 Pfam Major intrinsic protein 12 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc62021g00001 273 Gene3D Glycerol uptake facilitator protein. 2 236 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62021g00001 Stsc-Chr62021 2995 4793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62021g00001 1 227 Major Intrinsic Protein MIP AT2G25810 75.330 8.12e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62021g00001 K09873 - gmx:100793258 364.77