Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc62011g00002 ATGTCATTCCTTGAAGAGAATAGCTCAACTCTTGAATTTCATCAATTTGTTGAGACCTATGGCTTCATGGTTGATAATTCACATATGGGTAATTTAGGATTCAATAATTTCTCTAATACTTTGTTCAATAATAATATTCCACATATTAATAATAATAATAATAATAATAATAATAATACTATTACTTCTTCTAATGTTTCTTCCATCCCTTATACTAATGTTGATACCTTGTACCATAGCCCAATTGAGGAACAAGATTCCTTACAAACACTAATGGATTATTTTTCCATAGAATTGGACAATTCTAACCCCAATGTTAATGGAAAAAACCAAAGTTATTACCAAGAAGAAAGTAGTGGTGAGGGTAGCTTTTACCCCTCTTCACAAAACATTAGTGAAGAAGGGCAAAATGGTAATTGGAGCCCTACCACATCTTTGAATTCAGATTTGTCCTCATCATCATCAACTCAATTTCAACAACTTTTCTTGCCTCAACTAGGCATGGAAATTGACAAGAAGGTGGTGCTTCCACACATGGTGGAAGCTATTGGACAAGCTCTTGAAAAAGGCCACAAATCACAAGTTCAGGAGATCTTGAGAAGCATGAGCAACAAAGCTAGCCCAATTGATGAGCCATTTGAGTTCTACTTGGCCCAAGGTCGTGGTGGTGATTATCTAAAACAAGAGGCTATTAAACACTTTGATGATTTGTTTAGGGCCTTGTACCAAGGAGCCCCACATGGAAAAGTTGCAAACTTTGTTGCTAATTCCATCATTCTTGAGGCCATACCACATGATTGTGATGTTATACACATATTTGACTTTGATTTGTCAAATGGGGTTCAATGGTCTTCTATGATAGAAGCAATTGCACCCTTGAACAAAACATTGAAATTGACTTCAATCAAGAGTGTTGATGAAGGGTATGAATGTAATTTTCCTCAATGGAACTTTGAGGGAATTAAAAGGAGCCTCTATGAGCATGCAAGATCTTGTGGGTTTTTTAAGTTGAAGGTGGATGAGAAGGGAATAGAGGAAGTAGTTATGGAGATCAAAAAAGTCAACAAAAGGGGTGGGAAAAAGGAGTTTTTTGCCTTCAATTGCATGGTGGGCCTACCACATATGGGGAGAGAAAAGAGTAGAAAACATGTCATGGAGTTTCTAAATTTGATCCATCTTTGTGGCAACAAAAGGGCAATTTTGACTTTTGGTGATGGGGGTGCTTATGAGAAGTTGAGAAAGAATAATAATGGATTATTTGATTTCAAGTCATTTTATGATGGAAATTTGGTTCATTACAAGGCCTTGTTGGAATCAATTGAGTCACACTTCCCAGCATGTTTCTCAGATGCAAGAGCTGCTATTGAGTGCTTATTTTTGGCACCTAATATCTCTTCTCTATCATGGTTGCAACAATGGGAGGACATGAGAGAGGGTTTCAATTTTCATGCAGAAATTGGATTGGAGGGTTGTGGTTTAAGCCAAAGAAACTTGATGGAAGTTGGAGAGTTGTTGGAGGGTTGTGATGGTTCATATGGGGCCGCAATTGAAGGGCAAAATGGGAATGAATTAGTCCTTCTATGGAAAGGAACCCAGCTTTTAAGGGTTTCAGCATGGAGAAATTAA 1626 0.3733 MSFLEENSSTLEFHQFVETYGFMVDNSHMGNLGFNNFSNTLFNNNIPHINNNNNNNNNNTITSSNVSSIPYTNVDTLYHSPIEEQDSLQTLMDYFSIELDNSNPNVNGKNQSYYQEESSGEGSFYPSSQNISEEGQNGNWSPTTSLNSDLSSSSSTQFQQLFLPQLGMEIDKKVVLPHMVEAIGQALEKGHKSQVQEILRSMSNKASPIDEPFEFYLAQGRGGDYLKQEAIKHFDDLFRALYQGAPHGKVANFVANSIILEAIPHDCDVIHIFDFDLSNGVQWSSMIEAIAPLNKTLKLTSIKSVDEGYECNFPQWNFEGIKRSLYEHARSCGFFKLKVDEKGIEEVVMEIKKVNKRGGKKEFFAFNCMVGLPHMGREKSRKHVMEFLNLIHLCGNKRAILTFGDGGAYEKLRKNNNGLFDFKSFYDGNLVHYKALLESIESHFPACFSDARAAIECLFLAPNISSLSWLQQWEDMREGFNFHAEIGLEGCGLSQRNLMEVGELLEGCDGSYGAAIEGQNGNELVLLWKGTQLLRVSAWRN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc62011g00002 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 154 529 IPR005202 -
Stsc62011g00002 541 ProSiteProfiles GRAS family profile. 167 540 IPR005202 -
Stsc62011g00002 541 MobiDBLite consensus disorder prediction 103 152 - -
Stsc62011g00002 541 Pfam GRAS domain family 185 540 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc62011g00002 Stsc-Chr62011 10940 12565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc62011g00002 238 540 GRAS Transcription Factor Family AT3G60630 25.893 7.01e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc62011g00002 GRAS 5.8e-28 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc62011g00002 - - aip:107628481 858.981