LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc62006g00001	ATGAATTTGTGGAATGAATCCACCAACCACTGCACTTGGTTTGGGATCACATGCAACTTCTCCAATAATGGAAGGGTCATTTCATTGATCCTTTCAGACCAACAATTAACTGGAACTGTTCCTCCTTCAATTGGAAACCTCACATTCCTAACCAAACTCAACCTAAGAAACAACAGTTTCCATGGAGAGTTTCCTCAGCAAGTTGGAAATTTACAACATTTGCAACATGTTAACATTAGTTACAATGTTTTTGGTGGTAACATTTTTGGTAATCTAAGTCAGTGCAAGGAGTTAAGCATATTAGCTGCTGGTCACAACAATTTCACAGGAACAATTCCTTCTTGGGTTGGAAACTTTTCTTCTTCCATGTCTCAGATTAACCTTGCTGTGAACAACTTCCATGGAAGCATACCAAATGAGGTAGGGTATCTATCAAGCTTGACACTTCTTGCACTAAATGGGAATCACTTTTCTGGAACAATTCCTCTCTCAGTTTTCAATATCTCTTCTTTGTACTTTTTCACTGTTTCTCAAAACAATCTGCATGGTACTCTACCATTTGATGTTGGAACTACTCTTCCAAATCTTGAAATATTTGCTGGTGGAGTCAACAGTTTCACAGGAAAAATCCCTGAATCGTTGACCAATGCATCAAGGCTTCAAATTCTAGACTTTGCAGAAAATGGTCTCATTGGAACAATACCTAGAAAATTTTCAAGATTACCCCTTTTGGAAAGACTCAATTTTGAGGATAATAAACTTGGAAGTGGTAAAGTTGGAGACCTGAATTTTCTTGATTCATTGGTGAATTGTACTTCTCTTCAAGTTTTAGGCCTTGCTGGAAACAATTTTGGAGGTTATCTTCCTAGCTCAATTTCTAATCTTTCTACACAATTGGACACACTTACAGTAGGAGCTAATAAGCTACATGGAAGTGTTCCAATTGGGATTGGGAACCTTGTTAATCTAACATTGCTGGAATTGGAAGAGAATAGCTTTAGTGATCATGTTCCTTATACAATTGGTATGCTTCAAAATCTGGAAACTTTGGCATTGAGGGTCAACAATTTTTCAGGACCAATCCCTTCCTCTCTTGGGAACTTAACAAGATTAACAGGGTTACTCATGGAGGAGAACGATTTCGAGGGAAATATACCTTCAAGTCTTGGAAATTGCAAGAAATTGTTGATGCTAACTCTTCATTATAACAAGCTCAATGGTACCATACCAAGAGAAGTACTTGCCTTGTATTCTCTCTCAATTTCCTTGGATTTGTCTCATAACCTTTTGGCAGGTTTTGTGCCTATGGAAGTGGGTAATTTGGCCAATCTTGGAAAGTTGGATCTCTCATATAATAGATTTTCTGGCATGATTCCGGCCACTCTTGGCAGCTGTCTTAGTTTGGAGTTTCTGCATTTGCAGGGTAACTCTTTTGAGGGAAATATCCCTTCAACTTTTCAGAGTTTGAGAGGCTTAGAAGACTTAGATCTCTCATTCAATAACTTGTCTGGCAAGATTCCGCAATTTCTCGGCATGTTTCAAGAGTTGCATCACCTCAATCTTTCTTGCAATGATTTCGAAGGCGAAGTGCCAAAGAATGGAATCTTCAAGAATGTAACATCCTTTTCATTGGACAAAAATAGCAAGCTCTGTGGCGGCGTCACGGAGTTAAATTTATCAGCATGTGCTGTCAAGGAACACTCTTCATCTGGAAAATTTCTTGCTCCAAAGATTGTTGCACCTGTAGCCATTGCACTTGTATTTTTACTCTCTCTATCTTGTCGTGTGACAATCTTTGTGGCGAAAAGAGTAAGAAAGAAATCTCCAGCAACAACTACTACAAATGATTTGGAATTGCGAATTTCTTACTTGGAAATTGCAAGGAGCACCAAAGGATTTTCCCAAGAAAACTTGATTGGCACAGGTAGTTTTGGCTCTGTATACAAAGGAGTTCTTCCGGGCGATGGAACAATCGTTGCGGTCAAGGTATTAAATCTTGAACAAAGAGGAGCTTCTAGAAGCTTTATCAACGAATGCCAGGTTCTTCGAGCTACAAGGCACAGAAACCTTCTCAAGATTGTCACTGCAGTCTCAAGTGTTGATCATCAAGGTAATGACTTTAAAGCTTTGGTATTTGAGTTCATGCCAAATGGAAATCTAGATGATTGGCTTCATCCTACTATAAATAGTGTGGAATACGATCAAACCAAGAGGTTGAGCTTTATCCAAAGATTGAACATAGCAATTGATGTTGCTTGTGCATTGGAATATCTGCACCACTTCTCTGAAACTCCAATTGTCCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGACATGGTTGCACATGTTGGTGATTTTGGATTAGCTACATTTATGTTTGAAGATTCAAGCTATGTTTCTAAACAATCAATTATGTCAGCTTGCTTGAAGGGTTCTATTGGATACATCCCTCCAGAGTATGGAATGGGTGGGCATCCTTCTACACAAGGAGATATTTACAGCTATGGGATACTATTGTTAGAGATTTTCACAGGAAAAAGACCAACAGATGAAATTTTCGTAGGTGGCATGGGAATTAACCAGTTTACAGCCACAGCTATACCAAACCATGTCATGCATATAACTGATCCTTTATTGATCTCTGAAGAAGAGTATGAGCAAGGAGATGAAGATGAAGAAGATTTTACTGAGGAAGATGCAATAAGGAGGGAGCATGAACCTGAGATTCTTGCTACAATGCTGGATTGCTTGGTTTTATTGTTGCAAATTGGAGTGTCGTGCTCAGCAAATTCGCCTTGTGAAAGGTTGCCTATGAATGTTGTCGTTAACAAACTGCATGCAATCAAGAATATTTATCTTAGGACTCAGTAA	2880	0.3868	MNLWNESTNHCTWFGITCNFSNNGRVISLILSDQQLTGTVPPSIGNLTFLTKLNLRNNSFHGEFPQQVGNLQHLQHVNISYNVFGGNIFGNLSQCKELSILAAGHNNFTGTIPSWVGNFSSSMSQINLAVNNFHGSIPNEVGYLSSLTLLALNGNHFSGTIPLSVFNISSLYFFTVSQNNLHGTLPFDVGTTLPNLEIFAGGVNSFTGKIPESLTNASRLQILDFAENGLIGTIPRKFSRLPLLERLNFEDNKLGSGKVGDLNFLDSLVNCTSLQVLGLAGNNFGGYLPSSISNLSTQLDTLTVGANKLHGSVPIGIGNLVNLTLLELEENSFSDHVPYTIGMLQNLETLALRVNNFSGPIPSSLGNLTRLTGLLMEENDFEGNIPSSLGNCKKLLMLTLHYNKLNGTIPREVLALYSLSISLDLSHNLLAGFVPMEVGNLANLGKLDLSYNRFSGMIPATLGSCLSLEFLHLQGNSFEGNIPSTFQSLRGLEDLDLSFNNLSGKIPQFLGMFQELHHLNLSCNDFEGEVPKNGIFKNVTSFSLDKNSKLCGGVTELNLSACAVKEHSSSGKFLAPKIVAPVAIALVFLLSLSCRVTIFVAKRVRKKSPATTTTNDLELRISYLEIARSTKGFSQENLIGTGSFGSVYKGVLPGDGTIVAVKVLNLEQRGASRSFINECQVLRATRHRNLLKIVTAVSSVDHQGNDFKALVFEFMPNGNLDDWLHPTINSVEYDQTKRLSFIQRLNIAIDVACALEYLHHFSETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFMFEDSSYVSKQSIMSACLKGSIGYIPPEYGMGGHPSTQGDIYSYGILLLEIFTGKRPTDEIFVGGMGINQFTATAIPNHVMHITDPLLISEEEYEQGDEDEEDFTEEDAIRREHEPEILATMLDCLVLLLQIGVSCSANSPCERLPMNVVVNKLHAIKNIYLRTQ	959

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc62006g00001	959	SUPERFAMILY	L domain-like	298	552	-	-
	Stsc62006g00001	959	FunFam	Inactive leucine-rich repeat receptor-like protein kinase	269	562	-	-
	Stsc62006g00001	959	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	715	959	-	-
	Stsc62006g00001	959	Gene3D	Ribonuclease Inhibitor	93	190	IPR032675	-
	Stsc62006g00001	959	SUPERFAMILY	Protein kinase-like (PK-like)	612	948	IPR011009	-
	Stsc62006g00001	959	PANTHER	OS04G0122200 PROTEIN	143	955	-	-
	Stsc62006g00001	959	ProSitePatterns	Protein kinases ATP-binding region signature.	639	662	IPR017441	GO:0005524
	Stsc62006g00001	959	SMART	serkin_6	633	952	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc62006g00001	959	Gene3D	Ribonuclease Inhibitor	263	563	IPR032675	-
	Stsc62006g00001	959	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	604	714	-	-
	Stsc62006g00001	959	Pfam	Protein kinase domain	634	853	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc62006g00001	959	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	766	778	IPR008271	GO:0004672\|GO:0006468
	Stsc62006g00001	959	FunFam	LRR receptor-like serine/threonine-protein kinase GSO1	19	268	-	-
	Stsc62006g00001	959	Gene3D	Transferase(Phosphotransferase) domain 1	715	957	-	-
	Stsc62006g00001	959	SUPERFAMILY	L domain-like	2	289	-	-
	Stsc62006g00001	959	Gene3D	Phosphorylase Kinase; domain 1	595	714	-	-
	Stsc62006g00001	959	Gene3D	Ribonuclease Inhibitor	1	92	IPR032675	-
	Stsc62006g00001	959	Gene3D	Ribonuclease Inhibitor	191	262	IPR032675	-
	Stsc62006g00001	959	ProSiteProfiles	Protein kinase domain profile.	633	923	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc62006g00001	Stsc-Chr62006	1098	4368	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc62006g00001	4	958	Receptor kinase-like Gene Family	AT3G47570	42.568	0.0	748

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Stsc62006g00001		Pkinase	6.2e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc62006g00001	-		-	gmx:100785230	1322.38